Back to Multiple platform build/check report for BioC 3.11 |
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This page was generated on 2020-10-17 11:54:55 -0400 (Sat, 17 Oct 2020).
TO THE DEVELOPERS/MAINTAINERS OF THE Harman PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 801/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
Harman 1.16.0 Jason Ross
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | [ OK ] | OK | OK | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK |
Package: Harman |
Version: 1.16.0 |
Command: /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD INSTALL Harman |
StartedAt: 2020-10-16 16:07:36 -0400 (Fri, 16 Oct 2020) |
EndedAt: 2020-10-16 16:07:48 -0400 (Fri, 16 Oct 2020) |
EllapsedTime: 12.4 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD INSTALL Harman ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.11-bioc/R/library’ * installing *source* package ‘Harman’ ... ** using staged installation ** libs g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.11-bioc/R/include" -DNDEBUG -D_ARRAYALIGNEMT=4 -D_USE_RCPP=1 -I'/home/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include' -I/usr/local/include `/home/biocbuild/bbs-3.11-bioc/R/bin/Rscript -e "Rcpp:::CxxFlags()"` -I. -fpic -g -O2 -Wall -c Harman.cpp -o Harman.o Harman.cpp: In function ‘SEXPREC* HarmanMain(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’: Harman.cpp:3008:3: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else ^~~~ Harman.cpp:3022:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’ std::vector<unsigned int> tr_std_tmp = Rcpp::as<std::vector<unsigned int> >(tr) ; ^~~ In file included from Harman.cpp:182:0: CSelectRandom.h: In instantiation of ‘std::vector<unsigned int>* CSelectRandom<T>::ReturnVectOf32bitIntegersInRange_CSTDLIB(size_t, size_t, size_t, size_t) [with T = double; size_t = long unsigned int]’: Harman.cpp:1764:117: required from here CSelectRandom.h:943:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] while (currval < howManyIN) ~~~~~~~~^~~~~~~~~~~ g++ -std=gnu++11 -shared -L/home/biocbuild/bbs-3.11-bioc/R/lib -L/usr/local/lib -o Harman.so Harman.o -L/home/biocbuild/bbs-3.11-bioc/R/lib -lR installing to /home/biocbuild/bbs-3.11-bioc/R/library/00LOCK-Harman/00new/Harman/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Harman)