Robert Castelo
| Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020) |
| URL: https://git.bioconductor.org/packages/GenomicScores |
| Branch: RELEASE_3_11 |
| Last Commit: 4e942f2 |
| Last Changed Date: 2020-04-27 15:07:05 -0400 (Mon, 27 Apr 2020) |
| Back to Multiple platform build/check report for BioC 3.11 |
|
This page was generated on 2020-10-17 11:56:40 -0400 (Sat, 17 Oct 2020).
| TO THE DEVELOPERS/MAINTAINERS OF THE GenomicScores PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 713/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| GenomicScores 2.0.0 Robert Castelo
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | | ||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |
| Package: GenomicScores |
| Version: 2.0.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/GenomicScores_2.0.0.tar.gz && rm -rf GenomicScores.buildbin-libdir && mkdir GenomicScores.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GenomicScores.buildbin-libdir GenomicScores_2.0.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL GenomicScores_2.0.0.zip && rm GenomicScores_2.0.0.tar.gz GenomicScores_2.0.0.zip |
| StartedAt: 2020-10-16 18:59:03 -0400 (Fri, 16 Oct 2020) |
| EndedAt: 2020-10-16 19:00:57 -0400 (Fri, 16 Oct 2020) |
| EllapsedTime: 114.2 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/GenomicScores_2.0.0.tar.gz && rm -rf GenomicScores.buildbin-libdir && mkdir GenomicScores.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GenomicScores.buildbin-libdir GenomicScores_2.0.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL GenomicScores_2.0.0.zip && rm GenomicScores_2.0.0.tar.gz GenomicScores_2.0.0.zip
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install for i386
* installing *source* package 'GenomicScores' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'GenomicScores'
finding HTML links ... done
GScores-class html
finding level-2 HTML links ... done
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpW2igcr/R.INSTALL213445e45f18/GenomicScores/man/GScores-class.Rd:240: file link 'phastCons100way.UCSC.hg19' in package 'phastCons100way.UCSC.hg19' does not exist and so has been treated as a topic
GenomicScores-defunct html
GenomicScores-deprecated html
gscores html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpW2igcr/R.INSTALL213445e45f18/GenomicScores/man/gscores.Rd:123: file link 'phastCons100way.UCSC.hg19' in package 'phastCons100way.UCSC.hg19' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpW2igcr/R.INSTALL213445e45f18/GenomicScores/man/gscores.Rd:124: file link 'MafDb.1Kgenomes.phase1.hs37d5' in package 'MafDb.1Kgenomes.phase1.hs37d5' does not exist and so has been treated as a topic
igscores html
makeGScoresPackage html
rgscores html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpW2igcr/R.INSTALL213445e45f18/GenomicScores/man/rgscores.Rd:57: file link 'phastCons100way.UCSC.hg19' in package 'phastCons100way.UCSC.hg19' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpW2igcr/R.INSTALL213445e45f18/GenomicScores/man/rgscores.Rd:58: file link 'MafDb.1Kgenomes.phase1.hs37d5' in package 'MafDb.1Kgenomes.phase1.hs37d5' does not exist and so has been treated as a topic
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'GenomicScores' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'GenomicScores' as GenomicScores_2.0.0.zip
* DONE (GenomicScores)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'GenomicScores' successfully unpacked and MD5 sums checked