Christian Mertes
| Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020) |
| URL: https://git.bioconductor.org/packages/FRASER |
| Branch: RELEASE_3_11 |
| Last Commit: 0b8a9a0 |
| Last Changed Date: 2020-09-04 01:49:00 -0400 (Fri, 04 Sep 2020) |
| Back to Multiple platform build/check report for BioC 3.11 |
|
This page was generated on 2020-10-17 11:58:30 -0400 (Sat, 17 Oct 2020).
| TO THE DEVELOPERS/MAINTAINERS OF THE FRASER PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 638/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| FRASER 1.0.2 Christian Mertes
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | [ OK ] | |
| Package: FRASER |
| Version: 1.0.2 |
| Command: rm -rf FRASER.buildbin-libdir && mkdir FRASER.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh FRASER_1.0.2.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R FRASER.buildbin-libdir |
| StartedAt: 2020-10-17 07:05:57 -0400 (Sat, 17 Oct 2020) |
| EndedAt: 2020-10-17 07:07:30 -0400 (Sat, 17 Oct 2020) |
| EllapsedTime: 93.0 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: FRASER_1.0.2.tgz |
| PackageFileSize: 2.434 MiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf FRASER.buildbin-libdir && mkdir FRASER.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh FRASER_1.0.2.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R FRASER.buildbin-libdir ### ############################################################################## ############################################################################## >>>>>>> >>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=FRASER.buildbin-libdir FRASER_1.0.2.tar.gz' >>>>>>> * installing *source* package ‘FRASER’ ... ** using staged installation ** libs clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/RcppArmadillo/include' -I/usr/local/include -DARMA_DONT_USE_OPENMP -fPIC -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/RcppArmadillo/include' -I/usr/local/include -DARMA_DONT_USE_OPENMP -fPIC -Wall -g -O2 -c loss_n_gradient_functions.cpp -o loss_n_gradient_functions.o clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o FRASER.so RcppExports.o loss_n_gradient_functions.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Users/biocbuild/bbs-3.11-bioc/meat/FRASER.buildbin-libdir/00LOCK-FRASER/00new/FRASER/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (FRASER) >>>>>>> >>>>>>> FIXING LINKS FOR FRASER.buildbin-libdir/FRASER/libs/FRASER.so >>>>>>> install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libgcc_s.1.dylib" "FRASER.buildbin-libdir/FRASER/libs/FRASER.so" install_name_tool -change "/usr/local/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libgfortran.5.dylib" "FRASER.buildbin-libdir/FRASER/libs/FRASER.so" install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libquadmath.0.dylib" "FRASER.buildbin-libdir/FRASER/libs/FRASER.so" install_name_tool -change "/usr/local/gfortran/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libgfortran.5.dylib" "FRASER.buildbin-libdir/FRASER/libs/FRASER.so" install_name_tool -change "/usr/local/gfortran/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libquadmath.0.dylib" "FRASER.buildbin-libdir/FRASER/libs/FRASER.so"