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This page was generated on 2020-10-17 11:56:33 -0400 (Sat, 17 Oct 2020).
TO THE DEVELOPERS/MAINTAINERS OF THE ExpressionView PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 578/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
ExpressionView 1.40.0 Gabor Csardi
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | WARNINGS | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | [ OK ] | |||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK |
Package: ExpressionView |
Version: 1.40.0 |
Command: rm -rf ExpressionView.buildbin-libdir && mkdir ExpressionView.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ExpressionView.buildbin-libdir ExpressionView_1.40.0.tar.gz |
StartedAt: 2020-10-17 10:28:36 -0400 (Sat, 17 Oct 2020) |
EndedAt: 2020-10-17 10:29:20 -0400 (Sat, 17 Oct 2020) |
EllapsedTime: 43.8 seconds |
RetCode: 0 |
Status: OK |
PackageFile: ExpressionView_1.40.0.zip |
PackageFileSize: 1.551 MiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf ExpressionView.buildbin-libdir && mkdir ExpressionView.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ExpressionView.buildbin-libdir ExpressionView_1.40.0.tar.gz ### ############################################################################## ############################################################################## install for i386 * installing *source* package 'ExpressionView' ... ** using staged installation ** libs "C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c order.cpp -o order.o "C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c orderclusters.cpp -o orderclusters.o C:/rtools40/mingw32/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o ExpressionView.dll tmp.def order.o orderclusters.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/ExpressionView.buildbin-libdir/00LOCK-ExpressionView/00new/ExpressionView/libs/i386 ** R ** inst ** byte-compile and prepare package for lazy loading Warning message: Package 'KEGG.db' is deprecated and will be removed from Bioconductor version 3.12 in method for 'ExportEV' with signature 'biclusters="Biclust"': no definition for class "Biclust" ** help *** installing help indices converting help for package 'ExpressionView' finding HTML links ... done ExportEV html Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpUd0qz7/R.INSTALL1e6823a6228/ExpressionView/man/ExportEV.Rd:25: file link 'ISAModules' in package 'eisa' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpUd0qz7/R.INSTALL1e6823a6228/ExpressionView/man/ExportEV.Rd:28: file link 'ExpressionSet' in package 'Biobase' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpUd0qz7/R.INSTALL1e6823a6228/ExpressionView/man/ExportEV.Rd:67: file link 'ExpressionSet' in package 'Biobase' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpUd0qz7/R.INSTALL1e6823a6228/ExpressionView/man/ExportEV.Rd:73: file link 'biclust' in package 'biclust' does not exist and so has been treated as a topic ExpressionView-package html Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpUd0qz7/R.INSTALL1e6823a6228/ExpressionView/man/ExpressionView-package.Rd:17: file link 'ExpressionSet' in package 'Biobase' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpUd0qz7/R.INSTALL1e6823a6228/ExpressionView/man/ExpressionView-package.Rd:20: file link 'biclust' in package 'biclust' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpUd0qz7/R.INSTALL1e6823a6228/ExpressionView/man/ExpressionView-package.Rd:44: file link 'biclust' in package 'biclust' does not exist and so has been treated as a topic LaunchEV html Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpUd0qz7/R.INSTALL1e6823a6228/ExpressionView/man/LaunchEV.Rd:19: file link 'biclust' in package 'biclust' does not exist and so has been treated as a topic OrderEV html Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpUd0qz7/R.INSTALL1e6823a6228/ExpressionView/man/OrderEV.Rd:20: file link 'ISAModules' in package 'eisa' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpUd0qz7/R.INSTALL1e6823a6228/ExpressionView/man/OrderEV.Rd:61: file link 'biclust' in package 'biclust' does not exist and so has been treated as a topic ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location Warning: Package 'KEGG.db' is deprecated and will be removed from Bioconductor version 3.12 ** testing if installed package can be loaded from final location Warning: Package 'KEGG.db' is deprecated and will be removed from Bioconductor version 3.12 ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'ExpressionView' ... ** libs "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c order.cpp -o order.o "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c orderclusters.cpp -o orderclusters.o C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o ExpressionView.dll tmp.def order.o orderclusters.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/ExpressionView.buildbin-libdir/ExpressionView/libs/x64 ** testing if installed package can be loaded Warning: Package 'KEGG.db' is deprecated and will be removed from Bioconductor version 3.12 * MD5 sums packaged installation of 'ExpressionView' as ExpressionView_1.40.0.zip * DONE (ExpressionView)