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This page was generated on 2020-10-17 11:56:28 -0400 (Sat, 17 Oct 2020).
TO THE DEVELOPERS/MAINTAINERS OF THE DirichletMultinomial PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 479/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
DirichletMultinomial 1.30.0 Martin Morgan
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | [ OK ] | |||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK |
Package: DirichletMultinomial |
Version: 1.30.0 |
Command: rm -rf DirichletMultinomial.buildbin-libdir && mkdir DirichletMultinomial.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=DirichletMultinomial.buildbin-libdir DirichletMultinomial_1.30.0.tar.gz |
StartedAt: 2020-10-17 10:20:37 -0400 (Sat, 17 Oct 2020) |
EndedAt: 2020-10-17 10:21:25 -0400 (Sat, 17 Oct 2020) |
EllapsedTime: 47.2 seconds |
RetCode: 0 |
Status: OK |
PackageFile: DirichletMultinomial_1.30.0.zip |
PackageFileSize: 1007 KiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf DirichletMultinomial.buildbin-libdir && mkdir DirichletMultinomial.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=DirichletMultinomial.buildbin-libdir DirichletMultinomial_1.30.0.tar.gz ### ############################################################################## ############################################################################## install for i386 * installing *source* package 'DirichletMultinomial' ... ** using staged installation ** libs "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I/src/include -I/i386/include -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c R_init_DirichletMultinomial.c -o R_init_DirichletMultinomial.o "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I/src/include -I/i386/include -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c dirichlet_fit.c -o dirichlet_fit.o "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I/src/include -I/i386/include -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c dirichlet_fit_main.c -o dirichlet_fit_main.o dirichlet_fit_main.c: In function 'hessian': dirichlet_fit_main.c:391:34: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] adCJK0[j] += adPi[i] * n ? gsl_sf_psi(adAlpha[j] + n) : dPsiAlpha; ~~~~~~~~^~~ dirichlet_fit_main.c:393:33: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] adCJK[j] += adPi[i] * n ? gsl_sf_psi_1(adAlpha[j] + n): dPsi1Alpha; ~~~~~~~~^~~ dirichlet_fit_main.c: In function 'dirichlet_fit_main': dirichlet_fit_main.c:542:17: warning: variable 'status' set but not used [-Wunused-but-set-variable] int signum, status; ^~~~~~ C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o DirichletMultinomial.dll tmp.def R_init_DirichletMultinomial.o dirichlet_fit.o dirichlet_fit_main.o -L/i386/lib -lgsl -lgslcblas -lm -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/DirichletMultinomial.buildbin-libdir/00LOCK-DirichletMultinomial/00new/DirichletMultinomial/libs/i386 ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'DirichletMultinomial' finding HTML links ... done DMN-class html DMNGroup-class html finding level-2 HTML links ... done DirichletMultinomial-package html cvdmngroup html dataobjects html dmn html dmngroup html fitted html heatmapdmn html roc html util html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'DirichletMultinomial' ... ** libs "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I/src/include -I/x64/include -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c R_init_DirichletMultinomial.c -o R_init_DirichletMultinomial.o "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I/src/include -I/x64/include -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c dirichlet_fit.c -o dirichlet_fit.o "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I/src/include -I/x64/include -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c dirichlet_fit_main.c -o dirichlet_fit_main.o dirichlet_fit_main.c: In function 'hessian': dirichlet_fit_main.c:391:34: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] adCJK0[j] += adPi[i] * n ? gsl_sf_psi(adAlpha[j] + n) : dPsiAlpha; ~~~~~~~~^~~ dirichlet_fit_main.c:393:33: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] adCJK[j] += adPi[i] * n ? gsl_sf_psi_1(adAlpha[j] + n): dPsi1Alpha; ~~~~~~~~^~~ dirichlet_fit_main.c: In function 'dirichlet_fit_main': dirichlet_fit_main.c:542:17: warning: variable 'status' set but not used [-Wunused-but-set-variable] int signum, status; ^~~~~~ C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o DirichletMultinomial.dll tmp.def R_init_DirichletMultinomial.o dirichlet_fit.o dirichlet_fit_main.o -L/x64/lib -lgsl -lgslcblas -lm -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/DirichletMultinomial.buildbin-libdir/DirichletMultinomial/libs/x64 ** testing if installed package can be loaded * MD5 sums packaged installation of 'DirichletMultinomial' as DirichletMultinomial_1.30.0.zip * DONE (DirichletMultinomial)