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INSTALL report for DiffLogo on tokay2

This page was generated on 2020-10-17 11:56:28 -0400 (Sat, 17 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE DiffLogo PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 474/1905HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
DiffLogo 2.12.2
Hendrik Treutler
Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020)
URL: https://git.bioconductor.org/packages/DiffLogo
Branch: RELEASE_3_11
Last Commit: df91b9a
Last Changed Date: 2020-06-03 04:25:02 -0400 (Wed, 03 Jun 2020)
malbec2 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
machv2 macOS 10.14.6 Mojave / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: DiffLogo
Version: 2.12.2
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/DiffLogo_2.12.2.tar.gz && rm -rf DiffLogo.buildbin-libdir && mkdir DiffLogo.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=DiffLogo.buildbin-libdir DiffLogo_2.12.2.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL DiffLogo_2.12.2.zip && rm DiffLogo_2.12.2.tar.gz DiffLogo_2.12.2.zip
StartedAt: 2020-10-16 17:07:05 -0400 (Fri, 16 Oct 2020)
EndedAt: 2020-10-16 17:08:26 -0400 (Fri, 16 Oct 2020)
EllapsedTime: 80.5 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/DiffLogo_2.12.2.tar.gz && rm -rf DiffLogo.buildbin-libdir && mkdir DiffLogo.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=DiffLogo.buildbin-libdir DiffLogo_2.12.2.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL DiffLogo_2.12.2.zip && rm DiffLogo_2.12.2.tar.gz DiffLogo_2.12.2.zip
###
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100  744k  100  744k    0     0  10.9M      0 --:--:-- --:--:-- --:--:-- 12.1M

install for i386

* installing *source* package 'DiffLogo' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'DiffLogo'
    finding HTML links ... done
    ASN                                     html  
    Alphabet                                html  
    DNA                                     html  
    FULL_ALPHABET                           html  
    RNA                                     html  
    alignPwmSets                            html  
    baseDistributionPwm                     html  
    calculatePvalue                         html  
    createDiffLogoObject                    html  
    diffLogo                                html  
    diffLogoFromPwm                         html  
    diffLogoTable                           html  
    diffLogoTableConfiguration              html  
    differenceOfICs                         html  
    drawDiffLogoTable                       html  
    enrichDiffLogoObjectWithPvalues         html  
    enrichDiffLogoTableWithPvalues          html  
    extendPwmsFromAlignmentVector           html  
    getAlphabetFromCharacters               html  
    getAlphabetFromSequences                html  
    getPwmFromAlignment                     html  
    getPwmFromAlignmentFile                 html  
    getPwmFromFastaFile                     html  
    getPwmFromFile                          html  
    getPwmFromHomerFile                     html  
    getPwmFromPfmOrJasparFile               html  
    getPwmFromPwmFile                       html  
    getSequencesFromAlignmentFile           html  
    getSequencesFromFastaFile               html  
    informationContent                      html  
    localPwmAlignment                       html  
    lossOfAbsICDifferences                  html  
    multipleLocalPwmsAlignment              html  
    normalizePWM                            html  
    normalizedDifferenceOfProbabilities     html  
    prepareDiffLogoTable                    html  
    probabilities                           html  
    pwmDivergence                           html  
    pwmsDistanceMatrix                      html  
    reverseAlignmentVector                  html  
    seqLogo                                 html  
    shannonDivergence                       html  
    sumOfAbsICDifferences                   html  
    sumOfAbsProbabilityDifferences          html  
    sumProbabilities                        html  
    switchDirection                         html  
    twoSetsAveragePwmDivergenceFromAlignmentVector
                                            html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'DiffLogo' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'DiffLogo' as DiffLogo_2.12.2.zip
* DONE (DiffLogo)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'DiffLogo' successfully unpacked and MD5 sums checked