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INSTALL report for DMRcaller on tokay2

This page was generated on 2020-10-17 11:56:28 -0400 (Sat, 17 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE DMRcaller PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 488/1905HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
DMRcaller 1.20.0
Nicolae Radu Zabet
Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020)
URL: https://git.bioconductor.org/packages/DMRcaller
Branch: RELEASE_3_11
Last Commit: 60b08b5
Last Changed Date: 2020-04-27 14:48:00 -0400 (Mon, 27 Apr 2020)
malbec2 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
machv2 macOS 10.14.6 Mojave / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: DMRcaller
Version: 1.20.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/DMRcaller_1.20.0.tar.gz && rm -rf DMRcaller.buildbin-libdir && mkdir DMRcaller.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=DMRcaller.buildbin-libdir DMRcaller_1.20.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL DMRcaller_1.20.0.zip && rm DMRcaller_1.20.0.tar.gz DMRcaller_1.20.0.zip
StartedAt: 2020-10-16 17:57:18 -0400 (Fri, 16 Oct 2020)
EndedAt: 2020-10-16 17:58:33 -0400 (Fri, 16 Oct 2020)
EllapsedTime: 74.9 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/DMRcaller_1.20.0.tar.gz && rm -rf DMRcaller.buildbin-libdir && mkdir DMRcaller.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=DMRcaller.buildbin-libdir DMRcaller_1.20.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL DMRcaller_1.20.0.zip && rm DMRcaller_1.20.0.tar.gz DMRcaller_1.20.0.zip
###
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100 1127k  100 1127k    0     0   861k      0  0:00:01  0:00:01 --:--:--  866k

install for i386

* installing *source* package 'DMRcaller' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'DMRcaller'
    finding HTML links ... done
    DMRcaller                               html  
    finding level-2 HTML links ... done

    DMRsNoiseFilterCG                       html  
    GEs                                     html  
    analyseReadsInsideRegionsForCondition   html  
    computeDMRs                             html  
    computeDMRsReplicates                   html  
    computeMethylationDataCoverage          html  
    computeMethylationDataSpatialCorrelation
                                            html  
    computeMethylationProfile               html  
    computeOverlapProfile                   html  
    extractGC                               html  
    filterDMRs                              html  
    getWholeChromosomes                     html  
    joinReplicates                          html  
    mergeDMRsIteratively                    html  
    methylationDataList                     html  
    plotLocalMethylationProfile             html  
    plotMethylationDataCoverage             html  
    plotMethylationDataSpatialCorrelation   html  
    plotMethylationProfile                  html  
    plotMethylationProfileFromData          html  
    plotOverlapProfile                      html  
    poolMethylationDatasets                 html  
    poolTwoMethylationDatasets              html  
    readBismark                             html  
    readBismarkPool                         html  
    saveBismark                             html  
    syntheticDataReplicates                 html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'DMRcaller' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'DMRcaller' as DMRcaller_1.20.0.zip
* DONE (DMRcaller)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'DMRcaller' successfully unpacked and MD5 sums checked