Back to Multiple platform build/check report for BioC 3.11 |
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This page was generated on 2020-10-17 11:58:15 -0400 (Sat, 17 Oct 2020).
TO THE DEVELOPERS/MAINTAINERS OF THE ClusterJudge PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 318/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
ClusterJudge 1.10.0 Adrian Pasculescu
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | [ OK ] | OK |
Package: ClusterJudge |
Version: 1.10.0 |
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:ClusterJudge.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings ClusterJudge_1.10.0.tar.gz |
StartedAt: 2020-10-16 23:47:41 -0400 (Fri, 16 Oct 2020) |
EndedAt: 2020-10-16 23:52:23 -0400 (Fri, 16 Oct 2020) |
EllapsedTime: 281.5 seconds |
RetCode: 0 |
Status: OK |
CheckDir: ClusterJudge.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:ClusterJudge.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings ClusterJudge_1.10.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.11-bioc/meat/ClusterJudge.Rcheck’ * using R version 4.0.3 (2020-10-10) * using platform: x86_64-apple-darwin17.0 (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘ClusterJudge/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘ClusterJudge’ version ‘1.10.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘ClusterJudge’ can be installed ... OK * checking installed package size ... NOTE installed size is 5.3Mb sub-directories of 1Mb or more: data 5.1Mb * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed consolidate_entity_attribute 89.252 1.169 91.295 clusterJudge 69.536 1.812 71.471 clusterJudge_z_score 53.761 0.867 55.094 download_Yeast_GO_mapping 9.579 0.115 10.802 * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See ‘/Users/biocbuild/bbs-3.11-bioc/meat/ClusterJudge.Rcheck/00check.log’ for details.
ClusterJudge.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL ClusterJudge ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.0/Resources/library’ * installing *source* package ‘ClusterJudge’ ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ClusterJudge)
ClusterJudge.Rcheck/tests/testthat.Rout
R version 4.0.3 (2020-10-10) -- "Bunny-Wunnies Freak Out" Copyright (C) 2020 The R Foundation for Statistical Computing Platform: x86_64-apple-darwin17.0 (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > library(ClusterJudge) Loading required package: infotheo Loading required package: lattice Loading required package: latticeExtra Loading required package: httr Loading required package: jsonlite > > test_check("ClusterJudge") ══ testthat results ═══════════════════════════════════════════════════════════ [ OK: 2 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 0 ] > > proc.time() user system elapsed 2.197 0.163 2.339
ClusterJudge.Rcheck/ClusterJudge-Ex.timings
name | user | system | elapsed | |
Yeast.GO.assocs | 0.079 | 0.010 | 0.089 | |
attribute_mut_inf | 2.554 | 0.082 | 2.639 | |
clusterJudge | 69.536 | 1.812 | 71.471 | |
clusterJudge_z_score | 53.761 | 0.867 | 55.094 | |
consolidate_entity_attribute | 89.252 | 1.169 | 91.295 | |
convert_Yeast_SGDId_2_systematic | 0.092 | 0.017 | 1.864 | |
download_Yeast_GO_mapping | 9.579 | 0.115 | 10.802 | |
download_Yeast_Go_terms | 0.810 | 0.036 | 2.235 | |
entities_attribute_stats | 0.148 | 0.004 | 0.152 | |
mi.GO.Yeast | 1.700 | 0.128 | 1.834 | |
validate_association | 0.233 | 0.002 | 0.236 | |