Brad Nelms
| Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020) |
| URL: https://git.bioconductor.org/packages/CellMapper |
| Branch: RELEASE_3_11 |
| Last Commit: 387dae1 |
| Last Changed Date: 2020-04-27 15:00:27 -0400 (Mon, 27 Apr 2020) |
| Back to Multiple platform build/check report for BioC 3.11 |
|
This page was generated on 2020-10-17 11:56:13 -0400 (Sat, 17 Oct 2020).
| TO THE DEVELOPERS/MAINTAINERS OF THE CellMapper PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 251/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| CellMapper 1.14.0 Brad Nelms
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | | ||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK | |
| Package: CellMapper |
| Version: 1.14.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/CellMapper_1.14.0.tar.gz && rm -rf CellMapper.buildbin-libdir && mkdir CellMapper.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CellMapper.buildbin-libdir CellMapper_1.14.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL CellMapper_1.14.0.zip && rm CellMapper_1.14.0.tar.gz CellMapper_1.14.0.zip |
| StartedAt: 2020-10-16 16:57:40 -0400 (Fri, 16 Oct 2020) |
| EndedAt: 2020-10-16 16:58:19 -0400 (Fri, 16 Oct 2020) |
| EllapsedTime: 38.2 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/CellMapper_1.14.0.tar.gz && rm -rf CellMapper.buildbin-libdir && mkdir CellMapper.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CellMapper.buildbin-libdir CellMapper_1.14.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL CellMapper_1.14.0.zip && rm CellMapper_1.14.0.tar.gz CellMapper_1.14.0.zip
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install for i386
* installing *source* package 'CellMapper' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Warning: replacing previous import 'stats::sd' by 'S4Vectors::sd' when loading 'CellMapper'
Warning: replacing previous import 'stats::var' by 'S4Vectors::var' when loading 'CellMapper'
** help
*** installing help indices
converting help for package 'CellMapper'
finding HTML links ... done
CMprep html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmpi2SkxR/R.INSTALL40c7ca74bd/CellMapper/man/CMprep.Rd:51: file link 'ExpressionSet' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmpi2SkxR/R.INSTALL40c7ca74bd/CellMapper/man/CMprep.Rd:52: file link 'CellMapperData' in package 'CellMapperData' does not exist and so has been treated as a topic
CMsearch html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmpi2SkxR/R.INSTALL40c7ca74bd/CellMapper/man/CMsearch.Rd:74: file link 'CellMapperData' in package 'CellMapperData' does not exist and so has been treated as a topic
CellMapperList-class html
ExampleGeneLists html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmpi2SkxR/R.INSTALL40c7ca74bd/CellMapper/man/ExampleGeneLists.Rd:51: file link 'CellMapperData' in package 'CellMapperData' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmpi2SkxR/R.INSTALL40c7ca74bd/CellMapper/man/ExampleGeneLists.Rd:52: file link 'ExperimentHub' in package 'ExperimentHub' does not exist and so has been treated as a topic
ReplicateManuscript html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmpi2SkxR/R.INSTALL40c7ca74bd/CellMapper/man/ReplicateManuscript.Rd:33: file link 'CellMapperData' in package 'CellMapperData' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmpi2SkxR/R.INSTALL40c7ca74bd/CellMapper/man/ReplicateManuscript.Rd:34: file link 'ExperimentHub' in package 'ExperimentHub' does not exist and so has been treated as a topic
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: replacing previous import 'stats::sd' by 'S4Vectors::sd' when loading 'CellMapper'
Warning: replacing previous import 'stats::var' by 'S4Vectors::var' when loading 'CellMapper'
** testing if installed package can be loaded from final location
Warning: replacing previous import 'stats::sd' by 'S4Vectors::sd' when loading 'CellMapper'
Warning: replacing previous import 'stats::var' by 'S4Vectors::var' when loading 'CellMapper'
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'CellMapper' ...
** testing if installed package can be loaded
Warning: replacing previous import 'stats::sd' by 'S4Vectors::sd' when loading 'CellMapper'
Warning: replacing previous import 'stats::var' by 'S4Vectors::var' when loading 'CellMapper'
* MD5 sums
packaged installation of 'CellMapper' as CellMapper_1.14.0.zip
* DONE (CellMapper)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'CellMapper' successfully unpacked and MD5 sums checked