Back to Multiple platform build/check report for BioC 3.11 |
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This page was generated on 2020-10-17 11:56:13 -0400 (Sat, 17 Oct 2020).
TO THE DEVELOPERS/MAINTAINERS OF THE CellMapper PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 251/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
CellMapper 1.14.0 Brad Nelms
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | WARNINGS | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | |||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK |
Package: CellMapper |
Version: 1.14.0 |
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/CellMapper_1.14.0.tar.gz && rm -rf CellMapper.buildbin-libdir && mkdir CellMapper.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CellMapper.buildbin-libdir CellMapper_1.14.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL CellMapper_1.14.0.zip && rm CellMapper_1.14.0.tar.gz CellMapper_1.14.0.zip |
StartedAt: 2020-10-16 16:57:40 -0400 (Fri, 16 Oct 2020) |
EndedAt: 2020-10-16 16:58:19 -0400 (Fri, 16 Oct 2020) |
EllapsedTime: 38.2 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/CellMapper_1.14.0.tar.gz && rm -rf CellMapper.buildbin-libdir && mkdir CellMapper.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CellMapper.buildbin-libdir CellMapper_1.14.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL CellMapper_1.14.0.zip && rm CellMapper_1.14.0.tar.gz CellMapper_1.14.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 20509 100 20509 0 0 139k 0 --:--:-- --:--:-- --:--:-- 147k install for i386 * installing *source* package 'CellMapper' ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading Warning: replacing previous import 'stats::sd' by 'S4Vectors::sd' when loading 'CellMapper' Warning: replacing previous import 'stats::var' by 'S4Vectors::var' when loading 'CellMapper' ** help *** installing help indices converting help for package 'CellMapper' finding HTML links ... done CMprep html Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmpi2SkxR/R.INSTALL40c7ca74bd/CellMapper/man/CMprep.Rd:51: file link 'ExpressionSet' in package 'Biobase' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmpi2SkxR/R.INSTALL40c7ca74bd/CellMapper/man/CMprep.Rd:52: file link 'CellMapperData' in package 'CellMapperData' does not exist and so has been treated as a topic CMsearch html Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmpi2SkxR/R.INSTALL40c7ca74bd/CellMapper/man/CMsearch.Rd:74: file link 'CellMapperData' in package 'CellMapperData' does not exist and so has been treated as a topic CellMapperList-class html ExampleGeneLists html Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmpi2SkxR/R.INSTALL40c7ca74bd/CellMapper/man/ExampleGeneLists.Rd:51: file link 'CellMapperData' in package 'CellMapperData' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmpi2SkxR/R.INSTALL40c7ca74bd/CellMapper/man/ExampleGeneLists.Rd:52: file link 'ExperimentHub' in package 'ExperimentHub' does not exist and so has been treated as a topic ReplicateManuscript html Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmpi2SkxR/R.INSTALL40c7ca74bd/CellMapper/man/ReplicateManuscript.Rd:33: file link 'CellMapperData' in package 'CellMapperData' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmpi2SkxR/R.INSTALL40c7ca74bd/CellMapper/man/ReplicateManuscript.Rd:34: file link 'ExperimentHub' in package 'ExperimentHub' does not exist and so has been treated as a topic ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location Warning: replacing previous import 'stats::sd' by 'S4Vectors::sd' when loading 'CellMapper' Warning: replacing previous import 'stats::var' by 'S4Vectors::var' when loading 'CellMapper' ** testing if installed package can be loaded from final location Warning: replacing previous import 'stats::sd' by 'S4Vectors::sd' when loading 'CellMapper' Warning: replacing previous import 'stats::var' by 'S4Vectors::var' when loading 'CellMapper' ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'CellMapper' ... ** testing if installed package can be loaded Warning: replacing previous import 'stats::sd' by 'S4Vectors::sd' when loading 'CellMapper' Warning: replacing previous import 'stats::var' by 'S4Vectors::var' when loading 'CellMapper' * MD5 sums packaged installation of 'CellMapper' as CellMapper_1.14.0.zip * DONE (CellMapper) * installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library' package 'CellMapper' successfully unpacked and MD5 sums checked