BiGGR 1.23.0
Anand K. Gavai
| Snapshot Date: 2020-01-15 16:46:30 -0500 (Wed, 15 Jan 2020) |
| URL: https://git.bioconductor.org/packages/BiGGR |
| Branch: master |
| Last Commit: 46e2590 |
| Last Changed Date: 2019-10-29 13:36:57 -0500 (Tue, 29 Oct 2019) |
| malbec2 | Linux (Ubuntu 18.04.3 LTS) / x86_64 | OK | OK | WARNINGS | |  |
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | |
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | [ ERROR ] | skipped | skipped | |
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### Running command:
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### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data BiGGR
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* checking for file ‘BiGGR/DESCRIPTION’ ... OK
* preparing ‘BiGGR’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘BiGGR.Rnw’ using Sweave
Loading required package: rsbml
Loading required package: BiocGenerics
Loading required package: parallel
Attaching package: ‘BiocGenerics’
The following objects are masked from ‘package:parallel’:
clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
clusterExport, clusterMap, parApply, parCapply, parLapply,
parLapplyLB, parRapply, parSapply, parSapplyLB
The following objects are masked from ‘package:stats’:
IQR, mad, sd, var, xtabs
The following objects are masked from ‘package:base’:
Filter, Find, Map, Position, Reduce, anyDuplicated, append,
as.data.frame, basename, cbind, colnames, dirname, do.call,
duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
tapply, union, unique, unsplit, which, which.max, which.min
Warning: multiple methods tables found for ‘type’
Warning: multiple methods tables found for ‘type<-’
Attaching package: ‘rsbml’
The following objects are masked from ‘package:BiocGenerics’:
type, type<-
Loading required package: hyperdraw
Loading required package: LIM
Loading required package: limSolve
Loading required package: diagram
Loading required package: shape
Loading required package: stringr
Read 72 items
Lim file written to /tmp/RtmpyHzoKt/file49f531865b2
Lim file written to /tmp/RtmpyHzoKt/file49f54d9dd15c
Error: processing vignette 'BiGGR.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'BiGGR.tex' failed.
LaTeX errors:
! LaTeX Error: Command \counterwithout already defined.
Or name \end... illegal, see p.192 of the manual.
See the LaTeX manual or LaTeX Companion for explanation.
Type H <return> for immediate help.
! LaTeX Error: Command \counterwithin already defined.
Or name \end... illegal, see p.192 of the manual.
See the LaTeX manual or LaTeX Companion for explanation.
Type H <return> for immediate help.
--- failed re-building ‘BiGGR.Rnw’
SUMMARY: processing the following file failed:
‘BiGGR.Rnw’
Error: Vignette re-building failed.
Execution halted