Back to Workflows build report for BioC 3.10

BUILD report for annotation on malbec1

This page was generated on 2020-04-15 18:30:18 -0400 (Wed, 15 Apr 2020).

Package 1/27HostnameOS / ArchINSTALLBUILD
annotation 1.10.0
Bioconductor Package Maintainer
Snapshot Date: 2020-04-15 10:00:01 -0400 (Wed, 15 Apr 2020)
URL: https://git.bioconductor.org/packages/annotation
Branch: RELEASE_3_10
Last Commit: f387015
Last Changed Date: 2019-10-29 11:59:28 -0400 (Tue, 29 Oct 2019)
malbec1 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK [ ERROR ]

Summary

Package: annotation
Version: 1.10.0
Command: /home/biocbuild/bbs-3.10-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data annotation
StartedAt: 2020-04-15 11:01:58 -0400 (Wed, 15 Apr 2020)
EndedAt: 2020-04-15 11:06:28 -0400 (Wed, 15 Apr 2020)
EllapsedTime: 269.6 seconds
RetCode: 1
Status:  ERROR 
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.10-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data annotation
###
##############################################################################
##############################################################################


* checking for file ‘annotation/DESCRIPTION’ ... OK
* preparing ‘annotation’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘Annotating_Genomic_Ranges.Rmd’ using rmarkdown
--- finished re-building ‘Annotating_Genomic_Ranges.Rmd’

--- re-building ‘Annotation_Resources.Rmd’ using rmarkdown
Warning: Closing open result set, pending rows
Quitting from lines 655-659 (Annotation_Resources.Rmd) 
Error: processing vignette 'Annotation_Resources.Rmd' failed with diagnostics:
Invalid result set
--- failed re-building ‘Annotation_Resources.Rmd’

SUMMARY: processing the following file failed:
  ‘Annotation_Resources.Rmd’

Error: Vignette re-building failed.
Execution halted