Guangchuang Yu
| Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020) |
| URL: https://git.bioconductor.org/packages/treeio |
| Branch: RELEASE_3_10 |
| Last Commit: 7321912 |
| Last Changed Date: 2019-10-29 13:10:15 -0400 (Tue, 29 Oct 2019) |
| Back to Multiple platform build/check report for BioC 3.10 |
|
This page was generated on 2020-04-15 12:27:44 -0400 (Wed, 15 Apr 2020).
| Package 1750/1823 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| treeio 1.10.0 Guangchuang Yu
| malbec1 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | WARNINGS | OK | |
| Package: treeio |
| Version: 1.10.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/treeio_1.10.0.tar.gz && rm -rf treeio.buildbin-libdir && mkdir treeio.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=treeio.buildbin-libdir treeio_1.10.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL treeio_1.10.0.zip && rm treeio_1.10.0.tar.gz treeio_1.10.0.zip |
| StartedAt: 2020-04-14 18:54:32 -0400 (Tue, 14 Apr 2020) |
| EndedAt: 2020-04-14 18:55:11 -0400 (Tue, 14 Apr 2020) |
| EllapsedTime: 39.6 seconds |
| RetCode: 0 |
| Status: OK |
##############################################################################
##############################################################################
###
### Running command:
###
### C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/treeio_1.10.0.tar.gz && rm -rf treeio.buildbin-libdir && mkdir treeio.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=treeio.buildbin-libdir treeio_1.10.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL treeio_1.10.0.zip && rm treeio_1.10.0.tar.gz treeio_1.10.0.zip
###
##############################################################################
##############################################################################
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 500k 100 500k 0 0 11.6M 0 --:--:-- --:--:-- --:--:-- 12.8M
install for i386
* installing *source* package 'treeio' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
Warning: `data_frame()` is deprecated as of tibble 1.1.0.
Please use `tibble()` instead.
This warning is displayed once every 8 hours.
Call `lifecycle::last_warnings()` to see where this warning was generated.
** help
*** installing help indices
converting help for package 'treeio'
finding HTML links ... done
Nnode.treedata html
as.treedata html
beast-parser html
drop.tip-methods html
get-placements html
get.tree html
get.treetext-methods html
getNodeNum html
is.ggtree html
isTip html
jplace-class html
label_branch_paml html
mask html
merge_tree html
print.beastList html
raxml2nwk html
read-jtree html
read.astral html
read.codeml html
read.codeml_mlc html
read.fasta html
read.hyphy html
read.hyphy.seq html
read.iqtree html
read.jplace html
read.mega_tabular html
read.newick html
read.nhx html
read.paml_rst html
read.phylip html
read.phylip.seq html
read.phylip.tree html
read.phyloT html
read.r8s html
read.raxml html
reexports html
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpkxbFi5/R.INSTALL170862367b8/treeio/man/reexports.Rd:40: file link 'Nnode' in package 'ape' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpkxbFi5/R.INSTALL170862367b8/treeio/man/reexports.Rd:40: file link 'Ntip' in package 'ape' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpkxbFi5/R.INSTALL170862367b8/treeio/man/reexports.Rd:40: file link 'is.rooted' in package 'ape' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpkxbFi5/R.INSTALL170862367b8/treeio/man/reexports.Rd:42: file link 'full_join' in package 'dplyr' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpkxbFi5/R.INSTALL170862367b8/treeio/man/reexports.Rd:44: file link '%>%' in package 'magrittr' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpkxbFi5/R.INSTALL170862367b8/treeio/man/reexports.Rd:46: file link 'data_frame' in package 'tibble' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpkxbFi5/R.INSTALL170862367b8/treeio/man/reexports.Rd:48: file link 'get.fields' in package 'tidytree' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpkxbFi5/R.INSTALL170862367b8/treeio/man/reexports.Rd:48: file link 'get.data' in package 'tidytree' does not exist and so has been treated as a topic
rename_taxa html
rescale_tree html
root-method html
tree_subset html
write-jtree html
write.beast html
write.jplace html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'treeio' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'treeio' as treeio_1.10.0.zip
* DONE (treeio)
* installing to library 'C:/Users/biocbuild/bbs-3.10-bioc/R/library'
package 'treeio' successfully unpacked and MD5 sums checked