Back to Multiple platform build/check report for BioC 3.10
ABCDEFGHIJKL[M]NOPQRSTUVWXYZ

BUILD BIN report for methyAnalysis on tokay1

This page was generated on 2020-04-15 12:20:55 -0400 (Wed, 15 Apr 2020).

Package 1019/1823HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
methyAnalysis 1.28.0
Pan Du , Lei Huang , Gang Feng
Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020)
URL: https://git.bioconductor.org/packages/methyAnalysis
Branch: RELEASE_3_10
Last Commit: 7ecad42
Last Changed Date: 2019-10-29 13:08:33 -0400 (Tue, 29 Oct 2019)
malbec1 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64  OK  OK  WARNINGS [ OK ]UNNEEDED, same version exists in internal repository
merida1 OS X 10.11.6 El Capitan / x86_64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository

Summary

Package: methyAnalysis
Version: 1.28.0
Command: rm -rf methyAnalysis.buildbin-libdir && mkdir methyAnalysis.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=methyAnalysis.buildbin-libdir methyAnalysis_1.28.0.tar.gz
StartedAt: 2020-04-15 09:08:56 -0400 (Wed, 15 Apr 2020)
EndedAt: 2020-04-15 09:11:03 -0400 (Wed, 15 Apr 2020)
EllapsedTime: 126.7 seconds
RetCode: 0
Status:  OK  
PackageFile: methyAnalysis_1.28.0.zip
PackageFileSize: 1.901 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf methyAnalysis.buildbin-libdir && mkdir methyAnalysis.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=methyAnalysis.buildbin-libdir methyAnalysis_1.28.0.tar.gz
###
##############################################################################
##############################################################################



install for i386

* installing *source* package 'methyAnalysis' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
No methods found in package 'RSQLite' for request: 'dbListFields' when loading 'lumi'
No methods found in package 'genoset' for request: 'toGenomeOrder' when loading 'methyAnalysis'
** help
*** installing help indices
  converting help for package 'methyAnalysis'
    finding HTML links ... done
    MethyGenoSet-class                      html  
    finding level-2 HTML links ... done

Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmpu8rhE6/R.INSTALL200819187a60/methyAnalysis/man/MethyGenoSet-class.Rd:34: file link 'GenoSet' in package 'genoset' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmpu8rhE6/R.INSTALL200819187a60/methyAnalysis/man/MethyGenoSet-class.Rd:36: file link 'GenoSet' in package 'genoset' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmpu8rhE6/R.INSTALL200819187a60/methyAnalysis/man/MethyGenoSet-class.Rd:46: file link 'GenoSet' in package 'genoset' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmpu8rhE6/R.INSTALL200819187a60/methyAnalysis/man/MethyGenoSet-class.Rd:51: file link 'SummarizedExperiment' in package 'SummarizedExperiment' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmpu8rhE6/R.INSTALL200819187a60/methyAnalysis/man/MethyGenoSet-class.Rd:57: file link 'SummarizedExperiment' in package 'SummarizedExperiment' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmpu8rhE6/R.INSTALL200819187a60/methyAnalysis/man/MethyGenoSet-class.Rd:58: file link 'colData' in package 'SummarizedExperiment' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmpu8rhE6/R.INSTALL200819187a60/methyAnalysis/man/MethyGenoSet-class.Rd:86: file link 'GenoSet' in package 'genoset' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmpu8rhE6/R.INSTALL200819187a60/methyAnalysis/man/MethyGenoSet-class.Rd:91: file link 'SummarizedExperiment' in package 'SummarizedExperiment' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmpu8rhE6/R.INSTALL200819187a60/methyAnalysis/man/MethyGenoSet-class.Rd:92: file link 'GenoSet' in package 'genoset' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmpu8rhE6/R.INSTALL200819187a60/methyAnalysis/man/MethyGenoSet-class.Rd:92: file link 'SummarizedExperiment' in package 'SummarizedExperiment' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmpu8rhE6/R.INSTALL200819187a60/methyAnalysis/man/MethyGenoSet-class.Rd:100: file link 'GenoSet' in package 'genoset' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmpu8rhE6/R.INSTALL200819187a60/methyAnalysis/man/MethyGenoSet-class.Rd:100: file link 'SummarizedExperiment' in package 'SummarizedExperiment' does not exist and so has been treated as a topic
    MethyLumiM2GenoSet                      html  
    annotateDMRInfo                         html  
    annotateGRanges                         html  
    asBigMatrix-methods                     html  
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmpu8rhE6/R.INSTALL200819187a60/methyAnalysis/man/asBigMatrix-methods.Rd:15: file link 'GenoSet' in package 'genoset' does not exist and so has been treated as a topic
    buildAnnotationTracks                   html  
    checkChrName                            html  
    createTranscriptTrack                   html  
    detectDMR.slideWin                      html  
    estimateCMR.methylation                 html  
    estimateMethySeq                        html  
    exampleMethyGenoSet                     html  
    export.DMRInfo                          html  
    export.methyGenoSet                     html  
    filterBisulfiteVariant                  html  
    getContinuousRegion                     html  
    getCoverage                             html  
    heatmapByChromosome                     html  
    identifyCpG                             html  
    identifySigDMR                          html  
    plotHeatmapByGene                       html  
    plotMethylationHeatmapByGene            html  
    plotTracksWithDataTrackInfo             html  
    smoothMethyData                         html  
    updateMethyGenoSet                      html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
No methods found in package 'RSQLite' for request: 'dbListFields' when loading 'lumi'
No methods found in package 'genoset' for request: 'toGenomeOrder' when loading 'methyAnalysis'
** testing if installed package can be loaded from final location
No methods found in package 'RSQLite' for request: 'dbListFields' when loading 'lumi'
No methods found in package 'genoset' for request: 'toGenomeOrder' when loading 'methyAnalysis'
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'methyAnalysis' ...
** testing if installed package can be loaded
No methods found in package 'RSQLite' for request: 'dbListFields' when loading 'lumi'
No methods found in package 'genoset' for request: 'toGenomeOrder' when loading 'methyAnalysis'
* MD5 sums
packaged installation of 'methyAnalysis' as methyAnalysis_1.28.0.zip
* DONE (methyAnalysis)