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INSTALL report for bigmelon on tokay1

This page was generated on 2020-04-15 12:27:17 -0400 (Wed, 15 Apr 2020).

Package 141/1823HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
bigmelon 1.12.0
Tyler J. Gorrie-Stone
Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020)
URL: https://git.bioconductor.org/packages/bigmelon
Branch: RELEASE_3_10
Last Commit: c9d2cfb
Last Changed Date: 2019-10-29 13:10:06 -0400 (Tue, 29 Oct 2019)
malbec1 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64 [ OK ] OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
merida1 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: bigmelon
Version: 1.12.0
Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/bigmelon_1.12.0.tar.gz && rm -rf bigmelon.buildbin-libdir && mkdir bigmelon.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=bigmelon.buildbin-libdir bigmelon_1.12.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL bigmelon_1.12.0.zip && rm bigmelon_1.12.0.tar.gz bigmelon_1.12.0.zip
StartedAt: 2020-04-14 20:38:55 -0400 (Tue, 14 Apr 2020)
EndedAt: 2020-04-14 20:40:16 -0400 (Tue, 14 Apr 2020)
EllapsedTime: 80.5 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/bigmelon_1.12.0.tar.gz && rm -rf bigmelon.buildbin-libdir && mkdir bigmelon.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=bigmelon.buildbin-libdir bigmelon_1.12.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL bigmelon_1.12.0.zip && rm bigmelon_1.12.0.tar.gz bigmelon_1.12.0.zip
###
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100  681k  100  681k    0     0  11.5M      0 --:--:-- --:--:-- --:--:-- 12.3M

install for i386

* installing *source* package 'bigmelon' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
No methods found in package 'RSQLite' for request: 'dbListFields' when loading 'lumi'
Creating a new generic function for 'fot' in package 'bigmelon'
Creating a new generic function for 'predictSex' in package 'bigmelon'
** help
*** installing help indices
  converting help for package 'bigmelon'
    finding HTML links ... done
    GEOtoGDS                                html  
    app2gds                                 html  
    backupGdsn                              html  
    bigmelon-accessors                      html  
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmp84p2Gs/R.INSTALL2b5850085e1a/bigmelon/man/bigmelon-accessors.Rd:102: file link 'methylumi' in package 'methylumi' does not exist and so has been treated as a topic
    bigmelon-internal                       html  
    bigmelon-normalization                  html  
    finding level-2 HTML links ... done

    bigmelon-package                        html  
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmp84p2Gs/R.INSTALL2b5850085e1a/bigmelon/man/bigmelon-package.Rd:37: file link 'methylumi' in package 'methylumi' does not exist and so has been treated as a topic
    bumphunterGdsn                          html  
    cantaloupe                              html  
    combogds                                html  
    ecc                                     html  
    es2gds                                  html  
    finalreport2gds                         html  
    gds2mlumi                               html  
    getquantilesandranks                    html  
    iadd                                    html  
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmp84p2Gs/R.INSTALL2b5850085e1a/bigmelon/man/iadd.Rd:51: file link 'methylumIDATepic' in package 'wateRmelon' does not exist and so has been treated as a topic
    pfiltergds                              html  
    prcompgdsn                              html  
    pwodgdsn                                html  
    rankednorm                              html  
    redirect                                html  
    wm-port                                 html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
No methods found in package 'RSQLite' for request: 'dbListFields' when loading 'lumi'
** testing if installed package can be loaded from final location
No methods found in package 'RSQLite' for request: 'dbListFields' when loading 'lumi'
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'bigmelon' ...
** testing if installed package can be loaded
No methods found in package 'RSQLite' for request: 'dbListFields' when loading 'lumi'
* MD5 sums
packaged installation of 'bigmelon' as bigmelon_1.12.0.zip
* DONE (bigmelon)
* installing to library 'C:/Users/biocbuild/bbs-3.10-bioc/R/library'
package 'bigmelon' successfully unpacked and MD5 sums checked