Julius Muller
| Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020) |
| URL: https://git.bioconductor.org/packages/TransView |
| Branch: RELEASE_3_10 |
| Last Commit: 8f39927 |
| Last Changed Date: 2019-10-29 13:08:35 -0400 (Tue, 29 Oct 2019) |
| Back to Multiple platform build/check report for BioC 3.10 |
|
This page was generated on 2020-04-15 12:07:15 -0400 (Wed, 15 Apr 2020).
| Package 1748/1823 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| TransView 1.30.0 Julius Muller
| malbec1 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | [ OK ] | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: TransView |
| Version: 1.30.0 |
| Command: /home/biocbuild/bbs-3.10-bioc/R/bin/R CMD INSTALL TransView |
| StartedAt: 2020-04-14 18:27:38 -0400 (Tue, 14 Apr 2020) |
| EndedAt: 2020-04-14 18:27:57 -0400 (Tue, 14 Apr 2020) |
| EllapsedTime: 18.2 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### /home/biocbuild/bbs-3.10-bioc/R/bin/R CMD INSTALL TransView
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* installing to library ‘/home/biocbuild/bbs-3.10-bioc/R/library’
* installing *source* package ‘TransView’ ...
** using staged installation
** libs
gcc -I"/home/biocbuild/bbs-3.10-bioc/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I"/home/biocbuild/bbs-3.10-bioc/R/library/Rhtslib/include" -I/usr/local/include -fpic -g -O2 -Wall -c R_init_TransView.c -o R_init_TransView.o
gcc -I"/home/biocbuild/bbs-3.10-bioc/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I"/home/biocbuild/bbs-3.10-bioc/R/library/Rhtslib/include" -I/usr/local/include -fpic -g -O2 -Wall -c bam_plbuf.c -o bam_plbuf.o
gcc -I"/home/biocbuild/bbs-3.10-bioc/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I"/home/biocbuild/bbs-3.10-bioc/R/library/Rhtslib/include" -I/usr/local/include -fpic -g -O2 -Wall -c bin_density.c -o bin_density.o
gcc -I"/home/biocbuild/bbs-3.10-bioc/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I"/home/biocbuild/bbs-3.10-bioc/R/library/Rhtslib/include" -I/usr/local/include -fpic -g -O2 -Wall -c construct_dc.c -o construct_dc.o
In file included from /home/biocbuild/bbs-3.10-bioc/R/library/Rhtslib/include/htslib/hts.h:35:0,
from /home/biocbuild/bbs-3.10-bioc/R/library/Rhtslib/include/htslib/sam.h:31,
from /home/biocbuild/bbs-3.10-bioc/R/library/Rhtslib/include/sam.h:28,
from parse_sam.h:4,
from construct_dc.c:23:
/home/biocbuild/bbs-3.10-bioc/R/library/Rhtslib/include/htslib/hts_log.h:72:1: warning: ‘Rprintf’ is an unrecognized format function type [-Wformat=]
HTS_FORMAT(printf, 3, 4);
^~~~~~~~~~
gcc -I"/home/biocbuild/bbs-3.10-bioc/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I"/home/biocbuild/bbs-3.10-bioc/R/library/Rhtslib/include" -I/usr/local/include -fpic -g -O2 -Wall -c parse_sam.c -o parse_sam.o
gcc -I"/home/biocbuild/bbs-3.10-bioc/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I"/home/biocbuild/bbs-3.10-bioc/R/library/Rhtslib/include" -I/usr/local/include -fpic -g -O2 -Wall -c sam.c -o sam.o
gcc -I"/home/biocbuild/bbs-3.10-bioc/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I"/home/biocbuild/bbs-3.10-bioc/R/library/Rhtslib/include" -I/usr/local/include -fpic -g -O2 -Wall -c slice_dc.c -o slice_dc.o
slice_dc.c: In function ‘slice_dc’:
slice_dc.c:179:5: warning: ‘slicep’ may be used uninitialized in this function [-Wmaybe-uninitialized]
shrink(slicep,new_vecp,rebuildc,wsize,summarizep);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -I"/home/biocbuild/bbs-3.10-bioc/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I"/home/biocbuild/bbs-3.10-bioc/R/library/Rhtslib/include" -I/usr/local/include -fpic -g -O2 -Wall -c visuals.c -o visuals.o
gcc -shared -L/home/biocbuild/bbs-3.10-bioc/R/lib -L/usr/local/lib -o TransView.so R_init_TransView.o bam_plbuf.o bin_density.o construct_dc.o parse_sam.o sam.o slice_dc.o visuals.o /home/biocbuild/bbs-3.10-bioc/R/library/Rhtslib/usrlib/libhts.a -lcurl -L/home/biocbuild/bbs-3.10-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.10-bioc/R/library/00LOCK-TransView/00new/TransView/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (TransView)