Ge Tan
| Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020) |
| URL: https://git.bioconductor.org/packages/TFBSTools |
| Branch: RELEASE_3_10 |
| Last Commit: 952afaa |
| Last Changed Date: 2019-10-29 13:08:50 -0400 (Tue, 29 Oct 2019) |
| Back to Multiple platform build/check report for BioC 3.10 |
|
This page was generated on 2020-04-15 12:22:19 -0400 (Wed, 15 Apr 2020).
| Package 1717/1823 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| TFBSTools 1.24.0 Ge Tan
| malbec1 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: TFBSTools |
| Version: 1.24.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/TFBSTools_1.24.0.tar.gz && rm -rf TFBSTools.buildbin-libdir && mkdir TFBSTools.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=TFBSTools.buildbin-libdir TFBSTools_1.24.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL TFBSTools_1.24.0.zip && rm TFBSTools_1.24.0.tar.gz TFBSTools_1.24.0.zip |
| StartedAt: 2020-04-14 19:56:24 -0400 (Tue, 14 Apr 2020) |
| EndedAt: 2020-04-14 19:57:41 -0400 (Tue, 14 Apr 2020) |
| EllapsedTime: 77.1 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/TFBSTools_1.24.0.tar.gz && rm -rf TFBSTools.buildbin-libdir && mkdir TFBSTools.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=TFBSTools.buildbin-libdir TFBSTools_1.24.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL TFBSTools_1.24.0.zip && rm TFBSTools_1.24.0.tar.gz TFBSTools_1.24.0.zip
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install for i386
* installing *source* package 'TFBSTools' ...
** using staged installation
** libs
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=core2 -c matrixAlignerDynamic.c -o matrixAlignerDynamic.o
matrixAlignerDynamic.c: In function 'score':
matrixAlignerDynamic.c:235:22: warning: 'best_pntr' may be used uninitialized in this function [-Wmaybe-uninitialized]
while (current_pntr->father != NULL){ // while the father of the current pointer exists, walk through the best posible alignment
^
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=core2 -c R_init_TFBSTools.c -o R_init_TFBSTools.o
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o TFBSTools.dll tmp.def matrixAlignerDynamic.o R_init_TFBSTools.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.10-bioc/meat/TFBSTools.buildbin-libdir/00LOCK-TFBSTools/00new/TFBSTools/libs/i386
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
No methods found in package 'IRanges' for request: 'score' when loading 'TFBSTools'
Creating a new generic function for 'seqLogo' in package 'TFBSTools'
** help
*** installing help indices
converting help for package 'TFBSTools'
finding HTML links ... done
IUPAC2Matrix html
MA0004.1 html
MotifSet-class html
PFMSimilarity-methods html
PWMSimilarity-methods html
SitePairSet-class html
SitePairSetList-class html
SiteSet-class html
SiteSetList-class html
TFBSTools-package html
TFFM-class html
XMatrix-class html
XMatrixList-class html
calConservation-methods html
deleteMatrixHavingID-methods html
dmmEM-methods html
getEmissionProb html
getMatrixByID-methods html
getMatrixSet-methods html
getPosProb html
makeFlatFileDir html
parseMEMEOutput html
permuteMatrix-methods html
rPWMDmm-methods html
readJASPARMatrix html
readXMLTFFM html
runMEME-methods html
sampleRanges html
searchAln-methods html
searchPairBSgenome-methods html
searchSeq-methods html
seqLogo html
shannon.entropy html
toGRangesList-methods html
toICM-methods html
finding level-2 HTML links ... done
toPWM-methods html
writeGFF3-methods html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
No methods found in package 'IRanges' for request: 'score' when loading 'TFBSTools'
** testing if installed package can be loaded from final location
No methods found in package 'IRanges' for request: 'score' when loading 'TFBSTools'
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'TFBSTools' ...
** libs
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=core2 -c matrixAlignerDynamic.c -o matrixAlignerDynamic.o
matrixAlignerDynamic.c: In function 'score':
matrixAlignerDynamic.c:235:22: warning: 'best_pntr' may be used uninitialized in this function [-Wmaybe-uninitialized]
while (current_pntr->father != NULL){ // while the father of the current pointer exists, walk through the best posible alignment
^
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=core2 -c R_init_TFBSTools.c -o R_init_TFBSTools.o
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o TFBSTools.dll tmp.def matrixAlignerDynamic.o R_init_TFBSTools.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.10-bioc/meat/TFBSTools.buildbin-libdir/TFBSTools/libs/x64
** testing if installed package can be loaded
No methods found in package 'IRanges' for request: 'score' when loading 'TFBSTools'
* MD5 sums
packaged installation of 'TFBSTools' as TFBSTools_1.24.0.zip
* DONE (TFBSTools)
* installing to library 'C:/Users/biocbuild/bbs-3.10-bioc/R/library'
package 'TFBSTools' successfully unpacked and MD5 sums checked