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BUILD report for QUALIFIER on malbec1

This page was generated on 2020-04-15 12:06:49 -0400 (Wed, 15 Apr 2020).

Package 1348/1823HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
QUALIFIER 1.30.0
Mike Jiang
Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020)
URL: https://git.bioconductor.org/packages/QUALIFIER
Branch: RELEASE_3_10
Last Commit: 40f0663
Last Changed Date: 2019-10-29 13:08:28 -0400 (Tue, 29 Oct 2019)
malbec1 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK [ ERROR ] skipped 
tokay1 Windows Server 2012 R2 Standard / x64  OK  ERROR  skipped  skipped 
merida1 OS X 10.11.6 El Capitan / x86_64  OK  ERROR  skipped  skipped 

Summary

Package: QUALIFIER
Version: 1.30.0
Command: /home/biocbuild/bbs-3.10-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data QUALIFIER
StartedAt: 2020-04-14 20:12:11 -0400 (Tue, 14 Apr 2020)
EndedAt: 2020-04-14 20:12:32 -0400 (Tue, 14 Apr 2020)
EllapsedTime: 21.1 seconds
RetCode: 1
Status:  ERROR 
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.10-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data QUALIFIER
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* checking for file ‘QUALIFIER/DESCRIPTION’ ... OK
* preparing ‘QUALIFIER’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘QUALIFIER.Rmd’ using rmarkdown
Loading required package: flowCore
Loading required package: flowViz
Loading required package: lattice
Loading required package: ncdfFlow
Loading required package: RcppArmadillo
Loading required package: BH
Loading required package: flowWorkspace
Loading required package: data.table
Loading required package: reshape

Attaching package: 'reshape'

The following object is masked from 'package:data.table':

    melt

Quitting from lines 125-130 (QUALIFIER.Rmd) 
Error: processing vignette 'QUALIFIER.Rmd' failed with diagnostics:
no slot of name "name" for this object of class "GatingSet"
--- failed re-building ‘QUALIFIER.Rmd’

SUMMARY: processing the following file failed:
  ‘QUALIFIER.Rmd’

Error: Vignette re-building failed.
Execution halted