Michael Lawrence
| Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020) |
| URL: https://git.bioconductor.org/packages/HelloRanges |
| Branch: RELEASE_3_10 |
| Last Commit: b9f3913 |
| Last Changed Date: 2019-10-29 13:10:12 -0400 (Tue, 29 Oct 2019) |
| Back to Multiple platform build/check report for BioC 3.10 |
|
This page was generated on 2020-04-15 12:27:29 -0400 (Wed, 15 Apr 2020).
| Package 778/1823 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| HelloRanges 1.12.0 Michael Lawrence
| malbec1 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | [ OK ] | ERROR | skipped | skipped | |||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | ERROR | skipped | skipped |
| Package: HelloRanges |
| Version: 1.12.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/HelloRanges_1.12.0.tar.gz && rm -rf HelloRanges.buildbin-libdir && mkdir HelloRanges.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=HelloRanges.buildbin-libdir HelloRanges_1.12.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL HelloRanges_1.12.0.zip && rm HelloRanges_1.12.0.tar.gz HelloRanges_1.12.0.zip |
| StartedAt: 2020-04-14 19:58:10 -0400 (Tue, 14 Apr 2020) |
| EndedAt: 2020-04-14 19:59:16 -0400 (Tue, 14 Apr 2020) |
| EllapsedTime: 65.7 seconds |
| RetCode: 0 |
| Status: OK |
##############################################################################
##############################################################################
###
### Running command:
###
### C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/HelloRanges_1.12.0.tar.gz && rm -rf HelloRanges.buildbin-libdir && mkdir HelloRanges.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=HelloRanges.buildbin-libdir HelloRanges_1.12.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL HelloRanges_1.12.0.zip && rm HelloRanges_1.12.0.tar.gz HelloRanges_1.12.0.zip
###
##############################################################################
##############################################################################
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 1133k 100 1133k 0 0 6144k 0 --:--:-- --:--:-- --:--:-- 6295k
install for i386
* installing *source* package 'HelloRanges' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'HelloRanges'
finding HTML links ... done
argparse html
bedtools_closest html
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmpw1jcDI/R.INSTALL18503ab45e28/HelloRanges/man/bedtools_closest.Rd:126: file link 'nearest' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmpw1jcDI/R.INSTALL18503ab45e28/HelloRanges/man/bedtools_closest.Rd:150: file link 'nearest' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmpw1jcDI/R.INSTALL18503ab45e28/HelloRanges/man/bedtools_closest.Rd:150: file link 'precede' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmpw1jcDI/R.INSTALL18503ab45e28/HelloRanges/man/bedtools_closest.Rd:151: file link 'follow' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmpw1jcDI/R.INSTALL18503ab45e28/HelloRanges/man/bedtools_closest.Rd:151: file link 'nearest' in package 'GenomicRanges' does not exist and so has been treated as a topic
bedtools_complement html
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmpw1jcDI/R.INSTALL18503ab45e28/HelloRanges/man/bedtools_complement.Rd:59: file link 'setdiff' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmpw1jcDI/R.INSTALL18503ab45e28/HelloRanges/man/bedtools_complement.Rd:62: file link 'gaps' in package 'GenomicRanges' does not exist and so has been treated as a topic
bedtools_coverage html
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmpw1jcDI/R.INSTALL18503ab45e28/HelloRanges/man/bedtools_coverage.Rd:127: file link 'coverage' in package 'GenomicRanges' does not exist and so has been treated as a topic
bedtools_flank html
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmpw1jcDI/R.INSTALL18503ab45e28/HelloRanges/man/bedtools_flank.Rd:83: file link 'flank' in package 'GenomicRanges' does not exist and so has been treated as a topic
bedtools_genomecov html
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmpw1jcDI/R.INSTALL18503ab45e28/HelloRanges/man/bedtools_genomecov.Rd:112: file link 'coverage' in package 'GenomicRanges' does not exist and so has been treated as a topic
bedtools_getfasta html
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmpw1jcDI/R.INSTALL18503ab45e28/HelloRanges/man/bedtools_getfasta.Rd:72: file link 'import' in package 'rtracklayer' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmpw1jcDI/R.INSTALL18503ab45e28/HelloRanges/man/bedtools_getfasta.Rd:76: file link 'readDNAStringSet' in package 'Biostrings' does not exist and so has been treated as a topic
bedtools_groupby html
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmpw1jcDI/R.INSTALL18503ab45e28/HelloRanges/man/bedtools_groupby.Rd:77: file link 'aggregate' in package 'S4Vectors' does not exist and so has been treated as a topic
bedtools_intersect html
bedtools_jaccard html
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmpw1jcDI/R.INSTALL18503ab45e28/HelloRanges/man/bedtools_jaccard.Rd:97: file link 'intersect' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmpw1jcDI/R.INSTALL18503ab45e28/HelloRanges/man/bedtools_jaccard.Rd:98: file link 'union' in package 'GenomicRanges' does not exist and so has been treated as a topic
bedtools_makewindows html
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmpw1jcDI/R.INSTALL18503ab45e28/HelloRanges/man/bedtools_makewindows.Rd:71: file link 'tile' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmpw1jcDI/R.INSTALL18503ab45e28/HelloRanges/man/bedtools_makewindows.Rd:72: file link 'slidingWindows' in package 'IRanges' does not exist and so has been treated as a topic
bedtools_map html
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmpw1jcDI/R.INSTALL18503ab45e28/HelloRanges/man/bedtools_map.Rd:123: file link 'findOverlaps' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmpw1jcDI/R.INSTALL18503ab45e28/HelloRanges/man/bedtools_map.Rd:124: file link 'Hits' in package 'S4Vectors' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmpw1jcDI/R.INSTALL18503ab45e28/HelloRanges/man/bedtools_map.Rd:125: file link 'aggregate' in package 'S4Vectors' does not exist and so has been treated as a topic
bedtools_merge html
finding level-2 HTML links ... done
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmpw1jcDI/R.INSTALL18503ab45e28/HelloRanges/man/bedtools_merge.Rd:89: file link 'reduce' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmpw1jcDI/R.INSTALL18503ab45e28/HelloRanges/man/bedtools_merge.Rd:91: file link 'aggregate' in package 'S4Vectors' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmpw1jcDI/R.INSTALL18503ab45e28/HelloRanges/man/bedtools_merge.Rd:111: file link 'reduce' in package 'GenomicRanges' does not exist and so has been treated as a topic
bedtools_multiinter html
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmpw1jcDI/R.INSTALL18503ab45e28/HelloRanges/man/bedtools_multiinter.Rd:10: file link 'disjoin' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmpw1jcDI/R.INSTALL18503ab45e28/HelloRanges/man/bedtools_multiinter.Rd:69: file link 'disjoin' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmpw1jcDI/R.INSTALL18503ab45e28/HelloRanges/man/bedtools_multiinter.Rd:87: file link 'disjoin' in package 'GenomicRanges' does not exist and so has been treated as a topic
bedtools_nuc html
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmpw1jcDI/R.INSTALL18503ab45e28/HelloRanges/man/bedtools_nuc.Rd:69: file link 'alphabetFrequency' in package 'Biostrings' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmpw1jcDI/R.INSTALL18503ab45e28/HelloRanges/man/bedtools_nuc.Rd:71: file link 'vcountPattern' in package 'Biostrings' does not exist and so has been treated as a topic
bedtools_shift html
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmpw1jcDI/R.INSTALL18503ab45e28/HelloRanges/man/bedtools_shift.Rd:76: file link 'shift' in package 'IRanges' does not exist and so has been treated as a topic
bedtools_slop html
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmpw1jcDI/R.INSTALL18503ab45e28/HelloRanges/man/bedtools_slop.Rd:83: file link 'resize' in package 'GenomicRanges' does not exist and so has been treated as a topic
bedtools_subtract html
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmpw1jcDI/R.INSTALL18503ab45e28/HelloRanges/man/bedtools_subtract.Rd:107: file link 'setdiff' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmpw1jcDI/R.INSTALL18503ab45e28/HelloRanges/man/bedtools_subtract.Rd:118: file link 'subsetByOverlaps' in package 'GenomicRanges' does not exist and so has been treated as a topic
bedtools_unionbedg html
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmpw1jcDI/R.INSTALL18503ab45e28/HelloRanges/man/bedtools_unionbedg.Rd:10: file link 'disjoin' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmpw1jcDI/R.INSTALL18503ab45e28/HelloRanges/man/bedtools_unionbedg.Rd:85: file link 'disjoin' in package 'GenomicRanges' does not exist and so has been treated as a topic
distmode html
pair html
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmpw1jcDI/R.INSTALL18503ab45e28/HelloRanges/man/pair.Rd:45: file link 'Pairs' in package 'S4Vectors' does not exist and so has been treated as a topic
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'HelloRanges' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'HelloRanges' as HelloRanges_1.12.0.zip
* DONE (HelloRanges)
* installing to library 'C:/Users/biocbuild/bbs-3.10-bioc/R/library'
package 'HelloRanges' successfully unpacked and MD5 sums checked