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BUILD BIN report for DSS on tokay1

This page was generated on 2020-04-15 12:20:44 -0400 (Wed, 15 Apr 2020).

Package 489/1823HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
DSS 2.34.0
Hao Wu
Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020)
URL: https://git.bioconductor.org/packages/DSS
Branch: RELEASE_3_10
Last Commit: f9819c7
Last Changed Date: 2019-10-29 13:08:32 -0400 (Tue, 29 Oct 2019)
malbec1 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64  OK  OK  WARNINGS [ OK ]UNNEEDED, same version exists in internal repository
merida1 OS X 10.11.6 El Capitan / x86_64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository

Summary

Package: DSS
Version: 2.34.0
Command: rm -rf DSS.buildbin-libdir && mkdir DSS.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=DSS.buildbin-libdir DSS_2.34.0.tar.gz
StartedAt: 2020-04-15 08:37:40 -0400 (Wed, 15 Apr 2020)
EndedAt: 2020-04-15 08:38:52 -0400 (Wed, 15 Apr 2020)
EllapsedTime: 72.0 seconds
RetCode: 0
Status:  OK  
PackageFile: DSS_2.34.0.zip
PackageFileSize: 1.051 MiB

Command output

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### Running command:
###
###   rm -rf DSS.buildbin-libdir && mkdir DSS.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=DSS.buildbin-libdir DSS_2.34.0.tar.gz
###
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install for i386

* installing *source* package 'DSS' ...
** using staged installation
** libs
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c compute_var_smooth.c -o compute_var_smooth.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c filter.c -o filter.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c nitem.c -o nitem.o
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o DSS.dll tmp.def compute_var_smooth.o filter.o nitem.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.10-bioc/meat/DSS.buildbin-libdir/00LOCK-DSS/00new/DSS/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'DSS'
    finding HTML links ... done
    DMLfit.multiFactor                      html  
    DMLtest                                 html  
    DMLtest.multiFactor                     html  
    DSS-package                             html  
    DSS.DE                                  html  
    RRBS                                    html  
    SeqCountSet-class                       html  
    finding level-2 HTML links ... done

    callDML                                 html  
    callDMR                                 html  
    design                                  html  
    dispersion                              html  
    estDispersion                           html  
    estNormFactors                          html  
    makeBSseqData                           html  
    normalizationFactor                     html  
    seqData                                 html  
    showOneDMR                              html  
    waldTest                                html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'DSS' ...
** libs
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c compute_var_smooth.c -o compute_var_smooth.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c filter.c -o filter.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c nitem.c -o nitem.o
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o DSS.dll tmp.def compute_var_smooth.o filter.o nitem.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.10-bioc/meat/DSS.buildbin-libdir/DSS/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'DSS' as DSS_2.34.0.zip
* DONE (DSS)