Package: CSAR

Version: 1.38.0

Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/CSAR_1.38.0.tar.gz && rm -rf CSAR.buildbin-libdir && mkdir CSAR.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CSAR.buildbin-libdir CSAR_1.38.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL CSAR_1.38.0.zip && rm CSAR_1.38.0.tar.gz CSAR_1.38.0.zip

StartedAt: 2020-04-14 19:29:56 -0400 (Tue, 14 Apr 2020)

EndedAt: 2020-04-14 19:30:20 -0400 (Tue, 14 Apr 2020)

EllapsedTime: 23.5 seconds

RetCode: 0

Status:  OK

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### Running command:
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###   C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/CSAR_1.38.0.tar.gz && rm -rf CSAR.buildbin-libdir && mkdir CSAR.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CSAR.buildbin-libdir CSAR_1.38.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL CSAR_1.38.0.zip && rm CSAR_1.38.0.tar.gz CSAR_1.38.0.zip
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install for i386

* installing *source* package 'CSAR' ...
** using staged installation
** libs
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c CSAR.c -o CSAR.o
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o CSAR.dll tmp.def CSAR.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.10-bioc/meat/CSAR.buildbin-libdir/00LOCK-CSAR/00new/CSAR/libs/i386
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'CSAR'
    finding HTML links ... done
    CSAR-package                            html  
    ChIPseqScore                            html  
    distance2Genes                          html  
    genesWithPeaks                          html  
    getPermutatedWinScores                  html  
    getThreshold                            html  
    loadMappedReads                         html  
    mappedReads2Nhits                       html  
    permutatedWinScores                     html  
    sampleSEP3_test                         html  
    score2wig                               html  
    sigWin                                  html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'CSAR' ...
** libs
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c CSAR.c -o CSAR.o
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o CSAR.dll tmp.def CSAR.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.10-bioc/meat/CSAR.buildbin-libdir/CSAR/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'CSAR' as CSAR_1.38.0.zip
* DONE (CSAR)
* installing to library 'C:/Users/biocbuild/bbs-3.10-bioc/R/library'
package 'CSAR' successfully unpacked and MD5 sums checked