| Back to Multiple platform build/check report for BioC 3.10 |
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This page was generated on 2020-04-15 12:28:48 -0400 (Wed, 15 Apr 2020).
| Package 160/1823 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| BiocSklearn 1.8.1 VJ Carey
| malbec1 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | |||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | [ ERROR ] | skipped | skipped | |||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
| Package: BiocSklearn |
| Version: 1.8.1 |
| Command: chmod a+r BiocSklearn -R && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe --arch x64 CMD build --keep-empty-dirs --no-resave-data BiocSklearn |
| StartedAt: 2020-04-14 23:45:29 -0400 (Tue, 14 Apr 2020) |
| EndedAt: 2020-04-14 23:47:49 -0400 (Tue, 14 Apr 2020) |
| EllapsedTime: 139.9 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### chmod a+r BiocSklearn -R && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe --arch x64 CMD build --keep-empty-dirs --no-resave-data BiocSklearn
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* checking for file 'BiocSklearn/DESCRIPTION' ... OK
* preparing 'BiocSklearn':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'BiocSklearn.Rmd' using rmarkdown
Quitting from lines 170-173 (BiocSklearn.Rmd)
Error: processing vignette 'BiocSklearn.Rmd' failed with diagnostics:
RuntimeError: Evaluation error: Expecting a single string value: [type=environment; extent=2]..
Detailed traceback:
File "<string>", line 1, in <module>
File "C:\Python27\lib\site-packages\h5py\_hl\files.py", line 408, in __init__
swmr=swmr)
File "C:\Python27\lib\site-packages\h5py\_hl\files.py", line 194, in make_fid
"See the docs for details.", H5pyDeprecationWarning, stacklevel=3)
File "C:/Python27\lib\warnings.py", line 33, in _show_warning
file.write(formatwarning(message, category, filename, lineno, line))
File "C:/Users/biocbuild/bbs-3.10-bioc/R/library/reticulate/python\rpytools\output.py", line 105, in write
return self.handler(message)
File "C:/Users/biocbuild/bbs-3.10-bioc/R/library/reticulate/python\rpytools\call.py", line 21, in python_function
raise RuntimeError(res[kErrorKey])
--- failed re-building 'BiocSklearn.Rmd'
SUMMARY: processing the following file failed:
'BiocSklearn.Rmd'
Error: Vignette re-building failed.
Execution halted