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This page was generated on 2015-10-09 09:26:52 -0700 (Fri, 09 Oct 2015).
| Package 207/1024 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | |||||
| ComplexHeatmap 1.0.0 Zuguang Gu
| zin2 | Linux (Ubuntu 14.04.2 LTS) / x86_64 | OK | OK | [ OK ] |  | |||||
| moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | OK | OK | OK | | |||||
| petty | Mac OS X Snow Leopard (10.6.8) / x86_64 | OK | OK | OK | OK | | |||||
| morelia | Mac OS X Mavericks (10.9.5) / x86_64 | OK | OK | OK | OK | |
| Package: ComplexHeatmap |
| Version: 1.0.0 |
| Command: /home/biocbuild/bbs-3.1-bioc/R/bin/R CMD check --no-vignettes --timings ComplexHeatmap_1.0.0.tar.gz |
| StartedAt: 2015-10-08 23:53:49 -0700 (Thu, 08 Oct 2015) |
| EndedAt: 2015-10-08 23:54:59 -0700 (Thu, 08 Oct 2015) |
| EllapsedTime: 70.6 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: ComplexHeatmap.Rcheck |
| Warnings: 0 |
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### Running command:
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### /home/biocbuild/bbs-3.1-bioc/R/bin/R CMD check --no-vignettes --timings ComplexHeatmap_1.0.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.1-bioc/meat/ComplexHeatmap.Rcheck’
* using R version 3.2.2 (2015-08-14)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘ComplexHeatmap/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘ComplexHeatmap’ version ‘1.0.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘ComplexHeatmap’ can be installed ... [2s/3s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [19s/28s] OK
Examples with CPU or elapsed time > 5s
user system elapsed
Heatmap 7.628 0.011 10.736
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘test-all.R’ [1s/1s]
[1s/2s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
ComplexHeatmap.Rcheck/00install.out:
* installing *source* package ‘ComplexHeatmap’ ... ** R ** inst ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (ComplexHeatmap)
ComplexHeatmap.Rcheck/ComplexHeatmap-Ex.timings:
| name | user | system | elapsed | |
| AdditiveUnit-class | 0.000 | 0.000 | 0.001 | |
| AdditiveUnit | 0.001 | 0.000 | 0.001 | |
| ColorMapping-class | 0.000 | 0.000 | 0.001 | |
| ColorMapping | 0.023 | 0.000 | 0.045 | |
| Heatmap-class | 0 | 0 | 0 | |
| Heatmap | 7.628 | 0.011 | 10.736 | |
| HeatmapAnnotation-class | 0 | 0 | 0 | |
| HeatmapAnnotation | 0.007 | 0.000 | 0.014 | |
| HeatmapList-class | 2.860 | 0.003 | 4.625 | |
| HeatmapList | 0.001 | 0.000 | 0.000 | |
| SingleAnnotation-class | 0 | 0 | 0 | |
| SingleAnnotation | 0.020 | 0.000 | 0.032 | |
| add.AdditiveUnit | 3.175 | 0.001 | 4.463 | |
| add_heatmap-Heatmap-method | 0.778 | 0.000 | 1.404 | |
| add_heatmap-HeatmapAnnotation-method | 0.284 | 0.003 | 0.419 | |
| add_heatmap-HeatmapList-method | 1.313 | 0.000 | 2.148 | |
| add_heatmap-dispatch | 0 | 0 | 0 | |
| anno_barplot | 0.01 | 0.00 | 0.01 | |
| anno_boxplot | 0.024 | 0.000 | 0.024 | |
| anno_density | 0.219 | 0.000 | 0.219 | |
| anno_histogram | 0.04 | 0.00 | 0.04 | |
| anno_points | 0.005 | 0.000 | 0.005 | |
| annotation_legend_size-HeatmapList-method | 0 | 0 | 0 | |
| color_mapping_legend-ColorMapping-method | 0.057 | 0.000 | 0.057 | |
| component_height-Heatmap-method | 0 | 0 | 0 | |
| component_height-HeatmapList-method | 0 | 0 | 0 | |
| component_height-dispatch | 0 | 0 | 0 | |
| component_width-Heatmap-method | 0 | 0 | 0 | |
| component_width-HeatmapList-method | 0 | 0 | 0 | |
| component_width-dispatch | 0 | 0 | 0 | |
| dist2 | 0.002 | 0.000 | 0.002 | |
| draw-Heatmap-method | 0.274 | 0.000 | 0.327 | |
| draw-HeatmapAnnotation-method | 0.052 | 0.000 | 0.092 | |
| draw-HeatmapList-method | 1.036 | 0.000 | 1.561 | |
| draw-SingleAnnotation-method | 0.063 | 0.000 | 0.145 | |
| draw-dispatch | 0 | 0 | 0 | |
| draw_annotation-Heatmap-method | 0.001 | 0.000 | 0.000 | |
| draw_annotation_legend-HeatmapList-method | 0.000 | 0.000 | 0.001 | |
| draw_dimnames-Heatmap-method | 0 | 0 | 0 | |
| draw_hclust-Heatmap-method | 0 | 0 | 0 | |
| draw_heatmap_body-Heatmap-method | 0.000 | 0.000 | 0.001 | |
| draw_heatmap_legend-HeatmapList-method | 0.001 | 0.000 | 0.001 | |
| draw_heatmap_list-HeatmapList-method | 0.000 | 0.000 | 0.001 | |
| draw_title-Heatmap-method | 0.001 | 0.000 | 0.000 | |
| draw_title-HeatmapList-method | 0.000 | 0.000 | 0.001 | |
| draw_title-dispatch | 0.000 | 0.000 | 0.001 | |
| get_color_mapping_list-HeatmapAnnotation-method | 0.001 | 0.000 | 0.000 | |
| grid.dendrogram | 0.027 | 0.000 | 0.056 | |
| heatmap_legend_size-HeatmapList-method | 0 | 0 | 0 | |
| make_column_cluster-Heatmap-method | 0.001 | 0.000 | 0.000 | |
| make_layout-Heatmap-method | 0.001 | 0.000 | 0.004 | |
| make_layout-HeatmapList-method | 0.000 | 0.000 | 0.001 | |
| make_layout-dispatch | 0.000 | 0.000 | 0.001 | |
| make_row_cluster-Heatmap-method | 0.001 | 0.000 | 0.004 | |
| map_to_colors-ColorMapping-method | 0.024 | 0.000 | 0.048 | |
| prepare-Heatmap-method | 0 | 0 | 0 | |
| set_component_height-Heatmap-method | 0.000 | 0.000 | 0.001 | |
| show-Heatmap-method | 0.558 | 0.000 | 0.749 | |
| show-dispatch | 0.001 | 0.000 | 0.000 | |