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BioC 3.1: BUILD report for BSgenome on moscato2

This page was generated on 2015-10-09 09:27:41 -0700 (Fri, 09 Oct 2015).

Package 119/1024HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
BSgenome 1.36.3
H. Pages
Snapshot Date: 2015-10-08 17:20:21 -0700 (Thu, 08 Oct 2015)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_1/madman/Rpacks/BSgenome
Last Changed Rev: 106752 / Revision: 109384
Last Changed Date: 2015-07-24 18:26:18 -0700 (Fri, 24 Jul 2015)
zin2 Linux (Ubuntu 14.04.2 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK [ OK ] WARNINGS  OK UNNEEDED, same version exists in internal repository
petty Mac OS X Snow Leopard (10.6.8) / x86_64  OK  OK  ERROR  OK 
morelia Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository

Summary

Package: BSgenome
Version: 1.36.3
Command: chmod a+r BSgenome -R && E:\biocbld\bbs-3.1-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data BSgenome
StartedAt: 2015-10-08 19:32:37 -0700 (Thu, 08 Oct 2015)
EndedAt: 2015-10-08 19:34:22 -0700 (Thu, 08 Oct 2015)
EllapsedTime: 105.0 seconds
RetCode: 0
Status:  OK  
PackageFile: BSgenome_1.36.3.tar.gz
PackageFileSize: 5.781 MiB

Command output

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###
### Running command:
###
###   chmod a+r BSgenome -R && E:\biocbld\bbs-3.1-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data BSgenome
###
##############################################################################
##############################################################################


* checking for file 'BSgenome/DESCRIPTION' ... OK
* preparing 'BSgenome':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... OK
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
WARNING: directory 'BSgenome/inst/pkgtemplates/BSgenome_datapkg/inst/extdata' is empty
WARNING: directory 'BSgenome/inst/pkgtemplates/MaskedBSgenome_datapkg/inst/extdata' is empty
WARNING: directory 'BSgenome/tests/unit' is empty
* building 'BSgenome_1.36.3.tar.gz'
Warning in utils::tar(filepath, pkgname, compression = "gzip", compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  'BSgenome/inst/extdata/GentlemanLab/1000genomes/BSgenome.Hsapiens.1000g.b36female-tools/split_human_b36_female.sh'