install for i386
* installing *source* package 'kebabs' ...
** libs
gcc -m32 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -I"D:/biocbld/bbs-3.0-bioc/R/library/IRanges/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/XVector/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/Biostrings/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/S4Vectors/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O3 -Wall -std=gnu99 -mtune=core2 -c Biostrings_stubs.c -o Biostrings_stubs.o
gcc -m32 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -I"D:/biocbld/bbs-3.0-bioc/R/library/IRanges/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/XVector/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/Biostrings/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/S4Vectors/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O3 -Wall -std=gnu99 -mtune=core2 -c ByteStringVector.c -o ByteStringVector.o
g++ -m32 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -I"D:/biocbld/bbs-3.0-bioc/R/library/IRanges/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/XVector/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/Biostrings/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/S4Vectors/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -mtune=core2 -c ExplicitRepC.cpp -o ExplicitRepC.o
g++ -m32 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -I"D:/biocbld/bbs-3.0-bioc/R/library/IRanges/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/XVector/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/Biostrings/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/S4Vectors/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -mtune=core2 -c FeatureWeightsPosDepC.cpp -o FeatureWeightsPosDepC.o
g++ -m32 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -I"D:/biocbld/bbs-3.0-bioc/R/library/IRanges/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/XVector/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/Biostrings/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/S4Vectors/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -mtune=core2 -c GappyPairC.cpp -o GappyPairC.o
GappyPairC.cpp: In function 'void getKMPosDistGappy(T, Rcpp::NumericMatrix, ByteStringVector, ByteStringVector, int, int, Rcpp::IntegerVector, Rcpp::IntegerVector, Rcpp::IntegerVector, Rcpp::IntegerVector, bool, int, int, bool, bool, bool, bool, Rcpp::NumericVector, int, alphaInfo*) [with T = unsigned char, Rcpp::NumericMatrix = Rcpp::Matrix<14>, Rcpp::IntegerVector = Rcpp::Vector<13, Rcpp::PreserveStorage>, Rcpp::NumericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>]':
GappyPairC.cpp:3474:70: instantiated from here
GappyPairC.cpp:1555:9: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
GappyPairC.cpp: In function 'void getKMStdAnnGappy(T, Rcpp::NumericMatrix, ByteStringVector, ByteStringVector, int, int, Rcpp::IntegerVector, Rcpp::IntegerVector, ByteStringVector, ByteStringVector, ByteStringVector, bool, int, int, bool, bool, bool, bool, int, uint64_t, alphaInfo*) [with T = unsigned char, Rcpp::NumericMatrix = Rcpp::Matrix<14>, Rcpp::IntegerVector = Rcpp::Vector<13, Rcpp::PreserveStorage>, uint64_t = long long unsigned int]':
GappyPairC.cpp:3480:74: instantiated from here
GappyPairC.cpp:932:5: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
GappyPairC.cpp: In function 'void getKMPosDistGappy(T, Rcpp::NumericMatrix, ByteStringVector, ByteStringVector, int, int, Rcpp::IntegerVector, Rcpp::IntegerVector, Rcpp::IntegerVector, Rcpp::IntegerVector, bool, int, int, bool, bool, bool, bool, Rcpp::NumericVector, int, alphaInfo*) [with T = short unsigned int, Rcpp::NumericMatrix = Rcpp::Matrix<14>, Rcpp::IntegerVector = Rcpp::Vector<13, Rcpp::PreserveStorage>, Rcpp::NumericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>]':
GappyPairC.cpp:3492:70: instantiated from here
GappyPairC.cpp:1555:9: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
GappyPairC.cpp: In function 'void getKMStdAnnGappy(T, Rcpp::NumericMatrix, ByteStringVector, ByteStringVector, int, int, Rcpp::IntegerVector, Rcpp::IntegerVector, ByteStringVector, ByteStringVector, ByteStringVector, bool, int, int, bool, bool, bool, bool, int, uint64_t, alphaInfo*) [with T = short unsigned int, Rcpp::NumericMatrix = Rcpp::Matrix<14>, Rcpp::IntegerVector = Rcpp::Vector<13, Rcpp::PreserveStorage>, uint64_t = long long unsigned int]':
GappyPairC.cpp:3498:74: instantiated from here
GappyPairC.cpp:932:5: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
GappyPairC.cpp: In function 'void getKMPosDistGappy(T, Rcpp::NumericMatrix, ByteStringVector, ByteStringVector, int, int, Rcpp::IntegerVector, Rcpp::IntegerVector, Rcpp::IntegerVector, Rcpp::IntegerVector, bool, int, int, bool, bool, bool, bool, Rcpp::NumericVector, int, alphaInfo*) [with T = unsigned int, Rcpp::NumericMatrix = Rcpp::Matrix<14>, Rcpp::IntegerVector = Rcpp::Vector<13, Rcpp::PreserveStorage>, Rcpp::NumericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>]':
GappyPairC.cpp:3511:70: instantiated from here
GappyPairC.cpp:1555:9: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
GappyPairC.cpp: In function 'void getKMStdAnnGappy(T, Rcpp::NumericMatrix, ByteStringVector, ByteStringVector, int, int, Rcpp::IntegerVector, Rcpp::IntegerVector, ByteStringVector, ByteStringVector, ByteStringVector, bool, int, int, bool, bool, bool, bool, int, uint64_t, alphaInfo*) [with T = unsigned int, Rcpp::NumericMatrix = Rcpp::Matrix<14>, Rcpp::IntegerVector = Rcpp::Vector<13, Rcpp::PreserveStorage>, uint64_t = long long unsigned int]':
GappyPairC.cpp:3517:74: instantiated from here
GappyPairC.cpp:932:5: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
GappyPairC.cpp: In function 'void getKMPosDistGappy(T, Rcpp::NumericMatrix, ByteStringVector, ByteStringVector, int, int, Rcpp::IntegerVector, Rcpp::IntegerVector, Rcpp::IntegerVector, Rcpp::IntegerVector, bool, int, int, bool, bool, bool, bool, Rcpp::NumericVector, int, alphaInfo*) [with T = long long unsigned int, Rcpp::NumericMatrix = Rcpp::Matrix<14>, Rcpp::IntegerVector = Rcpp::Vector<13, Rcpp::PreserveStorage>, Rcpp::NumericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>]':
GappyPairC.cpp:3529:70: instantiated from here
GappyPairC.cpp:1555:9: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
GappyPairC.cpp: In function 'void getKMStdAnnGappy(T, Rcpp::NumericMatrix, ByteStringVector, ByteStringVector, int, int, Rcpp::IntegerVector, Rcpp::IntegerVector, ByteStringVector, ByteStringVector, ByteStringVector, bool, int, int, bool, bool, bool, bool, int, uint64_t, alphaInfo*) [with T = long long unsigned int, Rcpp::NumericMatrix = Rcpp::Matrix<14>, Rcpp::IntegerVector = Rcpp::Vector<13, Rcpp::PreserveStorage>, uint64_t = long long unsigned int]':
GappyPairC.cpp:3535:74: instantiated from here
GappyPairC.cpp:932:5: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
gcc -m32 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -I"D:/biocbld/bbs-3.0-bioc/R/library/IRanges/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/XVector/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/Biostrings/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/S4Vectors/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O3 -Wall -std=gnu99 -mtune=core2 -c IRanges_stubs.c -o IRanges_stubs.o
g++ -m32 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -I"D:/biocbld/bbs-3.0-bioc/R/library/IRanges/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/XVector/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/Biostrings/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/S4Vectors/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -mtune=core2 -c KernelUtils.cpp -o KernelUtils.o
g++ -m32 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -I"D:/biocbld/bbs-3.0-bioc/R/library/IRanges/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/XVector/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/Biostrings/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/S4Vectors/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -mtune=core2 -c MismatchC.cpp -o MismatchC.o
g++ -m32 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -I"D:/biocbld/bbs-3.0-bioc/R/library/IRanges/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/XVector/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/Biostrings/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/S4Vectors/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -mtune=core2 -c MotifC.cpp -o MotifC.o
g++ -m32 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -I"D:/biocbld/bbs-3.0-bioc/R/library/IRanges/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/XVector/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/Biostrings/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/S4Vectors/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -mtune=core2 -c PredictionC.cpp -o PredictionC.o
g++ -m32 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -I"D:/biocbld/bbs-3.0-bioc/R/library/IRanges/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/XVector/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/Biostrings/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/S4Vectors/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -mtune=core2 -c PredictionProfileC.cpp -o PredictionProfileC.o
g++ -m32 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -I"D:/biocbld/bbs-3.0-bioc/R/library/IRanges/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/XVector/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/Biostrings/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/S4Vectors/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -mtune=core2 -c R_init_kebabs.cpp -o R_init_kebabs.o
g++ -m32 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -I"D:/biocbld/bbs-3.0-bioc/R/library/IRanges/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/XVector/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/Biostrings/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/S4Vectors/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -mtune=core2 -c SparseMatrixHash.cpp -o SparseMatrixHash.o
g++ -m32 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -I"D:/biocbld/bbs-3.0-bioc/R/library/IRanges/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/XVector/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/Biostrings/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/S4Vectors/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -mtune=core2 -c SpectrumC.cpp -o SpectrumC.o
SpectrumC.cpp: In function 'void getKMPosDistSpec(T, Rcpp::NumericMatrix, ByteStringVector, ByteStringVector, int, int, Rcpp::IntegerVector, Rcpp::IntegerVector, Rcpp::IntegerVector, Rcpp::IntegerVector, bool, int, bool, bool, bool, bool, Rcpp::NumericVector, int, alphaInfo*) [with T = unsigned char, Rcpp::NumericMatrix = Rcpp::Matrix<14>, Rcpp::IntegerVector = Rcpp::Vector<13, Rcpp::PreserveStorage>, Rcpp::NumericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>]':
SpectrumC.cpp:3222:57: instantiated from here
SpectrumC.cpp:1134:9: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
SpectrumC.cpp: In function 'void getKMStdAnnSpec(T, Rcpp::NumericMatrix, ByteStringVector, ByteStringVector, int, int, Rcpp::IntegerVector, Rcpp::IntegerVector, ByteStringVector, ByteStringVector, ByteStringVector, bool, int, bool, bool, bool, bool, int, uint64_t, alphaInfo*) [with T = unsigned char, Rcpp::NumericMatrix = Rcpp::Matrix<14>, Rcpp::IntegerVector = Rcpp::Vector<13, Rcpp::PreserveStorage>, uint64_t = long long unsigned int]':
SpectrumC.cpp:3228:59: instantiated from here
SpectrumC.cpp:612:5: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
SpectrumC.cpp: In function 'void getKMPosDistSpec(T, Rcpp::NumericMatrix, ByteStringVector, ByteStringVector, int, int, Rcpp::IntegerVector, Rcpp::IntegerVector, Rcpp::IntegerVector, Rcpp::IntegerVector, bool, int, bool, bool, bool, bool, Rcpp::NumericVector, int, alphaInfo*) [with T = short unsigned int, Rcpp::NumericMatrix = Rcpp::Matrix<14>, Rcpp::IntegerVector = Rcpp::Vector<13, Rcpp::PreserveStorage>, Rcpp::NumericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>]':
SpectrumC.cpp:3240:57: instantiated from here
SpectrumC.cpp:1134:9: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
SpectrumC.cpp: In function 'void getKMStdAnnSpec(T, Rcpp::NumericMatrix, ByteStringVector, ByteStringVector, int, int, Rcpp::IntegerVector, Rcpp::IntegerVector, ByteStringVector, ByteStringVector, ByteStringVector, bool, int, bool, bool, bool, bool, int, uint64_t, alphaInfo*) [with T = short unsigned int, Rcpp::NumericMatrix = Rcpp::Matrix<14>, Rcpp::IntegerVector = Rcpp::Vector<13, Rcpp::PreserveStorage>, uint64_t = long long unsigned int]':
SpectrumC.cpp:3246:59: instantiated from here
SpectrumC.cpp:612:5: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
SpectrumC.cpp: In function 'void getKMPosDistSpec(T, Rcpp::NumericMatrix, ByteStringVector, ByteStringVector, int, int, Rcpp::IntegerVector, Rcpp::IntegerVector, Rcpp::IntegerVector, Rcpp::IntegerVector, bool, int, bool, bool, bool, bool, Rcpp::NumericVector, int, alphaInfo*) [with T = unsigned int, Rcpp::NumericMatrix = Rcpp::Matrix<14>, Rcpp::IntegerVector = Rcpp::Vector<13, Rcpp::PreserveStorage>, Rcpp::NumericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>]':
SpectrumC.cpp:3259:57: instantiated from here
SpectrumC.cpp:1134:9: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
SpectrumC.cpp: In function 'void getKMStdAnnSpec(T, Rcpp::NumericMatrix, ByteStringVector, ByteStringVector, int, int, Rcpp::IntegerVector, Rcpp::IntegerVector, ByteStringVector, ByteStringVector, ByteStringVector, bool, int, bool, bool, bool, bool, int, uint64_t, alphaInfo*) [with T = unsigned int, Rcpp::NumericMatrix = Rcpp::Matrix<14>, Rcpp::IntegerVector = Rcpp::Vector<13, Rcpp::PreserveStorage>, uint64_t = long long unsigned int]':
SpectrumC.cpp:3265:59: instantiated from here
SpectrumC.cpp:612:5: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
SpectrumC.cpp: In function 'void getKMPosDistSpec(T, Rcpp::NumericMatrix, ByteStringVector, ByteStringVector, int, int, Rcpp::IntegerVector, Rcpp::IntegerVector, Rcpp::IntegerVector, Rcpp::IntegerVector, bool, int, bool, bool, bool, bool, Rcpp::NumericVector, int, alphaInfo*) [with T = long long unsigned int, Rcpp::NumericMatrix = Rcpp::Matrix<14>, Rcpp::IntegerVector = Rcpp::Vector<13, Rcpp::PreserveStorage>, Rcpp::NumericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>]':
SpectrumC.cpp:3277:57: instantiated from here
SpectrumC.cpp:1134:9: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
SpectrumC.cpp: In function 'void getKMStdAnnSpec(T, Rcpp::NumericMatrix, ByteStringVector, ByteStringVector, int, int, Rcpp::IntegerVector, Rcpp::IntegerVector, ByteStringVector, ByteStringVector, ByteStringVector, bool, int, bool, bool, bool, bool, int, uint64_t, alphaInfo*) [with T = long long unsigned int, Rcpp::NumericMatrix = Rcpp::Matrix<14>, Rcpp::IntegerVector = Rcpp::Vector<13, Rcpp::PreserveStorage>, uint64_t = long long unsigned int]':
SpectrumC.cpp:3283:59: instantiated from here
SpectrumC.cpp:612:5: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
g++ -m32 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -I"D:/biocbld/bbs-3.0-bioc/R/library/IRanges/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/XVector/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/Biostrings/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/S4Vectors/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -mtune=core2 -c SymmetricPairC.cpp -o SymmetricPairC.o
g++ -m32 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -I"D:/biocbld/bbs-3.0-bioc/R/library/IRanges/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/XVector/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/Biostrings/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/S4Vectors/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -mtune=core2 -c Utils.cpp -o Utils.o
gcc -m32 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -I"D:/biocbld/bbs-3.0-bioc/R/library/IRanges/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/XVector/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/Biostrings/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/S4Vectors/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O3 -Wall -std=gnu99 -mtune=core2 -c XVector_stubs.c -o XVector_stubs.o
g++ -m32 -shared -s -static-libgcc -o kebabs.dll tmp.def Biostrings_stubs.o ByteStringVector.o ExplicitRepC.o FeatureWeightsPosDepC.o GappyPairC.o IRanges_stubs.o KernelUtils.o MismatchC.o MotifC.o PredictionC.o PredictionProfileC.o R_init_kebabs.o SparseMatrixHash.o SpectrumC.o SymmetricPairC.o Utils.o XVector_stubs.o -Ld:/RCompile/CRANpkg/extralibs64/local/lib/i386 -Ld:/RCompile/CRANpkg/extralibs64/local/lib -LD:/biocbld/BBS-3˜1.0-B/R/bin/i386 -lR
installing to D:/biocbld/bbs-3.0-bioc/meat/kebabs.buildbin-libdir/kebabs/libs/i386
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
install for x64
* installing *source* package 'kebabs' ...
** libs
gcc -m64 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -I"D:/biocbld/bbs-3.0-bioc/R/library/IRanges/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/XVector/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/Biostrings/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/S4Vectors/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -std=gnu99 -mtune=core2 -c Biostrings_stubs.c -o Biostrings_stubs.o
gcc -m64 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -I"D:/biocbld/bbs-3.0-bioc/R/library/IRanges/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/XVector/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/Biostrings/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/S4Vectors/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -std=gnu99 -mtune=core2 -c ByteStringVector.c -o ByteStringVector.o
g++ -m64 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -I"D:/biocbld/bbs-3.0-bioc/R/library/IRanges/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/XVector/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/Biostrings/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/S4Vectors/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -mtune=core2 -c ExplicitRepC.cpp -o ExplicitRepC.o
g++ -m64 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -I"D:/biocbld/bbs-3.0-bioc/R/library/IRanges/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/XVector/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/Biostrings/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/S4Vectors/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -mtune=core2 -c FeatureWeightsPosDepC.cpp -o FeatureWeightsPosDepC.o
g++ -m64 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -I"D:/biocbld/bbs-3.0-bioc/R/library/IRanges/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/XVector/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/Biostrings/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/S4Vectors/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -mtune=core2 -c GappyPairC.cpp -o GappyPairC.o
GappyPairC.cpp: In function 'void getKMPosDistGappy(T, Rcpp::NumericMatrix, ByteStringVector, ByteStringVector, int, int, Rcpp::IntegerVector, Rcpp::IntegerVector, Rcpp::IntegerVector, Rcpp::IntegerVector, bool, int, int, bool, bool, bool, bool, Rcpp::NumericVector, int, alphaInfo*) [with T = unsigned char, Rcpp::NumericMatrix = Rcpp::Matrix<14>, Rcpp::IntegerVector = Rcpp::Vector<13, Rcpp::PreserveStorage>, Rcpp::NumericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>]':
GappyPairC.cpp:3474:70: instantiated from here
GappyPairC.cpp:1555:9: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
GappyPairC.cpp: In function 'void getKMStdAnnGappy(T, Rcpp::NumericMatrix, ByteStringVector, ByteStringVector, int, int, Rcpp::IntegerVector, Rcpp::IntegerVector, ByteStringVector, ByteStringVector, ByteStringVector, bool, int, int, bool, bool, bool, bool, int, uint64_t, alphaInfo*) [with T = unsigned char, Rcpp::NumericMatrix = Rcpp::Matrix<14>, Rcpp::IntegerVector = Rcpp::Vector<13, Rcpp::PreserveStorage>, uint64_t = long long unsigned int]':
GappyPairC.cpp:3480:74: instantiated from here
GappyPairC.cpp:932:5: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
GappyPairC.cpp: In function 'void getKMPosDistGappy(T, Rcpp::NumericMatrix, ByteStringVector, ByteStringVector, int, int, Rcpp::IntegerVector, Rcpp::IntegerVector, Rcpp::IntegerVector, Rcpp::IntegerVector, bool, int, int, bool, bool, bool, bool, Rcpp::NumericVector, int, alphaInfo*) [with T = short unsigned int, Rcpp::NumericMatrix = Rcpp::Matrix<14>, Rcpp::IntegerVector = Rcpp::Vector<13, Rcpp::PreserveStorage>, Rcpp::NumericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>]':
GappyPairC.cpp:3492:70: instantiated from here
GappyPairC.cpp:1555:9: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
GappyPairC.cpp: In function 'void getKMStdAnnGappy(T, Rcpp::NumericMatrix, ByteStringVector, ByteStringVector, int, int, Rcpp::IntegerVector, Rcpp::IntegerVector, ByteStringVector, ByteStringVector, ByteStringVector, bool, int, int, bool, bool, bool, bool, int, uint64_t, alphaInfo*) [with T = short unsigned int, Rcpp::NumericMatrix = Rcpp::Matrix<14>, Rcpp::IntegerVector = Rcpp::Vector<13, Rcpp::PreserveStorage>, uint64_t = long long unsigned int]':
GappyPairC.cpp:3498:74: instantiated from here
GappyPairC.cpp:932:5: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
GappyPairC.cpp: In function 'void getKMPosDistGappy(T, Rcpp::NumericMatrix, ByteStringVector, ByteStringVector, int, int, Rcpp::IntegerVector, Rcpp::IntegerVector, Rcpp::IntegerVector, Rcpp::IntegerVector, bool, int, int, bool, bool, bool, bool, Rcpp::NumericVector, int, alphaInfo*) [with T = unsigned int, Rcpp::NumericMatrix = Rcpp::Matrix<14>, Rcpp::IntegerVector = Rcpp::Vector<13, Rcpp::PreserveStorage>, Rcpp::NumericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>]':
GappyPairC.cpp:3511:70: instantiated from here
GappyPairC.cpp:1555:9: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
GappyPairC.cpp: In function 'void getKMStdAnnGappy(T, Rcpp::NumericMatrix, ByteStringVector, ByteStringVector, int, int, Rcpp::IntegerVector, Rcpp::IntegerVector, ByteStringVector, ByteStringVector, ByteStringVector, bool, int, int, bool, bool, bool, bool, int, uint64_t, alphaInfo*) [with T = unsigned int, Rcpp::NumericMatrix = Rcpp::Matrix<14>, Rcpp::IntegerVector = Rcpp::Vector<13, Rcpp::PreserveStorage>, uint64_t = long long unsigned int]':
GappyPairC.cpp:3517:74: instantiated from here
GappyPairC.cpp:932:5: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
GappyPairC.cpp: In function 'void getKMPosDistGappy(T, Rcpp::NumericMatrix, ByteStringVector, ByteStringVector, int, int, Rcpp::IntegerVector, Rcpp::IntegerVector, Rcpp::IntegerVector, Rcpp::IntegerVector, bool, int, int, bool, bool, bool, bool, Rcpp::NumericVector, int, alphaInfo*) [with T = long long unsigned int, Rcpp::NumericMatrix = Rcpp::Matrix<14>, Rcpp::IntegerVector = Rcpp::Vector<13, Rcpp::PreserveStorage>, Rcpp::NumericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>]':
GappyPairC.cpp:3529:70: instantiated from here
GappyPairC.cpp:1555:9: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
GappyPairC.cpp: In function 'void getKMStdAnnGappy(T, Rcpp::NumericMatrix, ByteStringVector, ByteStringVector, int, int, Rcpp::IntegerVector, Rcpp::IntegerVector, ByteStringVector, ByteStringVector, ByteStringVector, bool, int, int, bool, bool, bool, bool, int, uint64_t, alphaInfo*) [with T = long long unsigned int, Rcpp::NumericMatrix = Rcpp::Matrix<14>, Rcpp::IntegerVector = Rcpp::Vector<13, Rcpp::PreserveStorage>, uint64_t = long long unsigned int]':
GappyPairC.cpp:3535:74: instantiated from here
GappyPairC.cpp:932:5: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
gcc -m64 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -I"D:/biocbld/bbs-3.0-bioc/R/library/IRanges/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/XVector/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/Biostrings/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/S4Vectors/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -std=gnu99 -mtune=core2 -c IRanges_stubs.c -o IRanges_stubs.o
g++ -m64 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -I"D:/biocbld/bbs-3.0-bioc/R/library/IRanges/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/XVector/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/Biostrings/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/S4Vectors/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -mtune=core2 -c KernelUtils.cpp -o KernelUtils.o
g++ -m64 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -I"D:/biocbld/bbs-3.0-bioc/R/library/IRanges/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/XVector/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/Biostrings/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/S4Vectors/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -mtune=core2 -c MismatchC.cpp -o MismatchC.o
g++ -m64 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -I"D:/biocbld/bbs-3.0-bioc/R/library/IRanges/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/XVector/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/Biostrings/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/S4Vectors/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -mtune=core2 -c MotifC.cpp -o MotifC.o
g++ -m64 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -I"D:/biocbld/bbs-3.0-bioc/R/library/IRanges/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/XVector/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/Biostrings/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/S4Vectors/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -mtune=core2 -c PredictionC.cpp -o PredictionC.o
g++ -m64 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -I"D:/biocbld/bbs-3.0-bioc/R/library/IRanges/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/XVector/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/Biostrings/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/S4Vectors/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -mtune=core2 -c PredictionProfileC.cpp -o PredictionProfileC.o
g++ -m64 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -I"D:/biocbld/bbs-3.0-bioc/R/library/IRanges/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/XVector/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/Biostrings/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/S4Vectors/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -mtune=core2 -c R_init_kebabs.cpp -o R_init_kebabs.o
g++ -m64 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -I"D:/biocbld/bbs-3.0-bioc/R/library/IRanges/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/XVector/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/Biostrings/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/S4Vectors/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -mtune=core2 -c SparseMatrixHash.cpp -o SparseMatrixHash.o
g++ -m64 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -I"D:/biocbld/bbs-3.0-bioc/R/library/IRanges/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/XVector/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/Biostrings/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/S4Vectors/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -mtune=core2 -c SpectrumC.cpp -o SpectrumC.o
SpectrumC.cpp: In function 'void getKMPosDistSpec(T, Rcpp::NumericMatrix, ByteStringVector, ByteStringVector, int, int, Rcpp::IntegerVector, Rcpp::IntegerVector, Rcpp::IntegerVector, Rcpp::IntegerVector, bool, int, bool, bool, bool, bool, Rcpp::NumericVector, int, alphaInfo*) [with T = unsigned char, Rcpp::NumericMatrix = Rcpp::Matrix<14>, Rcpp::IntegerVector = Rcpp::Vector<13, Rcpp::PreserveStorage>, Rcpp::NumericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>]':
SpectrumC.cpp:3222:57: instantiated from here
SpectrumC.cpp:1134:9: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
SpectrumC.cpp: In function 'void getKMStdAnnSpec(T, Rcpp::NumericMatrix, ByteStringVector, ByteStringVector, int, int, Rcpp::IntegerVector, Rcpp::IntegerVector, ByteStringVector, ByteStringVector, ByteStringVector, bool, int, bool, bool, bool, bool, int, uint64_t, alphaInfo*) [with T = unsigned char, Rcpp::NumericMatrix = Rcpp::Matrix<14>, Rcpp::IntegerVector = Rcpp::Vector<13, Rcpp::PreserveStorage>, uint64_t = long long unsigned int]':
SpectrumC.cpp:3228:59: instantiated from here
SpectrumC.cpp:612:5: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
SpectrumC.cpp: In function 'void getKMPosDistSpec(T, Rcpp::NumericMatrix, ByteStringVector, ByteStringVector, int, int, Rcpp::IntegerVector, Rcpp::IntegerVector, Rcpp::IntegerVector, Rcpp::IntegerVector, bool, int, bool, bool, bool, bool, Rcpp::NumericVector, int, alphaInfo*) [with T = short unsigned int, Rcpp::NumericMatrix = Rcpp::Matrix<14>, Rcpp::IntegerVector = Rcpp::Vector<13, Rcpp::PreserveStorage>, Rcpp::NumericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>]':
SpectrumC.cpp:3240:57: instantiated from here
SpectrumC.cpp:1134:9: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
SpectrumC.cpp: In function 'void getKMStdAnnSpec(T, Rcpp::NumericMatrix, ByteStringVector, ByteStringVector, int, int, Rcpp::IntegerVector, Rcpp::IntegerVector, ByteStringVector, ByteStringVector, ByteStringVector, bool, int, bool, bool, bool, bool, int, uint64_t, alphaInfo*) [with T = short unsigned int, Rcpp::NumericMatrix = Rcpp::Matrix<14>, Rcpp::IntegerVector = Rcpp::Vector<13, Rcpp::PreserveStorage>, uint64_t = long long unsigned int]':
SpectrumC.cpp:3246:59: instantiated from here
SpectrumC.cpp:612:5: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
SpectrumC.cpp: In function 'void getKMPosDistSpec(T, Rcpp::NumericMatrix, ByteStringVector, ByteStringVector, int, int, Rcpp::IntegerVector, Rcpp::IntegerVector, Rcpp::IntegerVector, Rcpp::IntegerVector, bool, int, bool, bool, bool, bool, Rcpp::NumericVector, int, alphaInfo*) [with T = unsigned int, Rcpp::NumericMatrix = Rcpp::Matrix<14>, Rcpp::IntegerVector = Rcpp::Vector<13, Rcpp::PreserveStorage>, Rcpp::NumericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>]':
SpectrumC.cpp:3259:57: instantiated from here
SpectrumC.cpp:1134:9: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
SpectrumC.cpp: In function 'void getKMStdAnnSpec(T, Rcpp::NumericMatrix, ByteStringVector, ByteStringVector, int, int, Rcpp::IntegerVector, Rcpp::IntegerVector, ByteStringVector, ByteStringVector, ByteStringVector, bool, int, bool, bool, bool, bool, int, uint64_t, alphaInfo*) [with T = unsigned int, Rcpp::NumericMatrix = Rcpp::Matrix<14>, Rcpp::IntegerVector = Rcpp::Vector<13, Rcpp::PreserveStorage>, uint64_t = long long unsigned int]':
SpectrumC.cpp:3265:59: instantiated from here
SpectrumC.cpp:612:5: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
SpectrumC.cpp: In function 'void getKMPosDistSpec(T, Rcpp::NumericMatrix, ByteStringVector, ByteStringVector, int, int, Rcpp::IntegerVector, Rcpp::IntegerVector, Rcpp::IntegerVector, Rcpp::IntegerVector, bool, int, bool, bool, bool, bool, Rcpp::NumericVector, int, alphaInfo*) [with T = long long unsigned int, Rcpp::NumericMatrix = Rcpp::Matrix<14>, Rcpp::IntegerVector = Rcpp::Vector<13, Rcpp::PreserveStorage>, Rcpp::NumericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>]':
SpectrumC.cpp:3277:57: instantiated from here
SpectrumC.cpp:1134:9: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
SpectrumC.cpp: In function 'void getKMStdAnnSpec(T, Rcpp::NumericMatrix, ByteStringVector, ByteStringVector, int, int, Rcpp::IntegerVector, Rcpp::IntegerVector, ByteStringVector, ByteStringVector, ByteStringVector, bool, int, bool, bool, bool, bool, int, uint64_t, alphaInfo*) [with T = long long unsigned int, Rcpp::NumericMatrix = Rcpp::Matrix<14>, Rcpp::IntegerVector = Rcpp::Vector<13, Rcpp::PreserveStorage>, uint64_t = long long unsigned int]':
SpectrumC.cpp:3283:59: instantiated from here
SpectrumC.cpp:612:5: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
g++ -m64 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -I"D:/biocbld/bbs-3.0-bioc/R/library/IRanges/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/XVector/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/Biostrings/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/S4Vectors/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -mtune=core2 -c SymmetricPairC.cpp -o SymmetricPairC.o
g++ -m64 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -I"D:/biocbld/bbs-3.0-bioc/R/library/IRanges/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/XVector/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/Biostrings/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/S4Vectors/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -mtune=core2 -c Utils.cpp -o Utils.o
gcc -m64 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -I"D:/biocbld/bbs-3.0-bioc/R/library/IRanges/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/XVector/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/Biostrings/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/S4Vectors/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -std=gnu99 -mtune=core2 -c XVector_stubs.c -o XVector_stubs.o
g++ -m64 -shared -s -static-libgcc -o kebabs.dll tmp.def Biostrings_stubs.o ByteStringVector.o ExplicitRepC.o FeatureWeightsPosDepC.o GappyPairC.o IRanges_stubs.o KernelUtils.o MismatchC.o MotifC.o PredictionC.o PredictionProfileC.o R_init_kebabs.o SparseMatrixHash.o SpectrumC.o SymmetricPairC.o Utils.o XVector_stubs.o -Ld:/RCompile/CRANpkg/extralibs64/local/lib/x64 -Ld:/RCompile/CRANpkg/extralibs64/local/lib -LD:/biocbld/BBS-3˜1.0-B/R/bin/x64 -lR
installing to D:/biocbld/bbs-3.0-bioc/meat/kebabs.buildbin-libdir/kebabs/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'kebabs' as kebabs_1.0.5.zip
* DONE (kebabs)