genefu 1.16.0
Benjamin Haibe-Kains , Markus Schroeder
| Snapshot Date: 2015-04-09 16:20:12 -0700 (Thu, 09 Apr 2015) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_0/madman/Rpacks/genefu | | Last Changed Rev: 95439 / Revision: 102249 | | Last Changed Date: 2014-10-13 14:38:33 -0700 (Mon, 13 Oct 2014) |
| zin1 | Linux (Ubuntu 12.04.4 LTS) / x86_64 | NotNeeded | OK | [ OK ] | |
| moscato1 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | NotNeeded | OK | OK | OK |
| perceval | Mac OS X Snow Leopard (10.6.8) / x86_64 | NotNeeded | OK | OK | OK |
| oaxaca | Mac OS X Mavericks (10.9.5) / x86_64 | NotNeeded | OK | OK | OK |
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### Running command:
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### /home/biocbuild/bbs-3.0-bioc/R/bin/R CMD check --no-vignettes --timings genefu_1.16.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.0-bioc/meat/genefu.Rcheck’
* using R version 3.1.3 (2015-03-09)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘genefu/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘genefu’ version ‘1.16.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘genefu’ can be installed ... [14s/14s] OK
* checking installed package size ... NOTE
installed size is 6.0Mb
sub-directories of 1Mb or more:
data 5.0Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Unexported objects imported by ':::' calls:
‘mclust:::grid1’ ‘mclust:::grid2’
See the note in ?`:::` about the use of this operator.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
endoPredict: no visible binding for global variable ‘sig.endoPredict’
gene70: no visible binding for global variable ‘sig.gene70’
gene76: no visible binding for global variable ‘sig.gene76’
genius: no visible binding for global variable ‘scmod1.robust’
genius: no visible binding for global variable ‘sig.genius’
ggi: no visible binding for global variable ‘sig.ggi’
oncotypedx: no visible binding for global variable ‘sig.oncotypedx’
ovcAngiogenic: no visible binding for global variable
‘sigOvcAngiogenic’
ovcAngiogenic: no visible binding for global variable
‘modelOvcAngiogenic’
ovcCrijns: no visible binding for global variable ‘sigOvcCrijns’
ovcTCGA: no visible binding for global variable ‘sigOvcTCGA’
ovcYoshihara: no visible binding for global variable ‘sigOvcYoshihara’
pik3cags: no visible binding for global variable ‘sig.pik3cags’
rorS: no visible binding for global variable ‘pam50’
subtype.cluster: no visible global function definition for ‘unmap’
subtype.cluster: no visible global function definition for
‘mclust.options’
subtype.cluster.predict: no visible global function definition for
‘unmap’
tamr13: no visible binding for global variable ‘sig.tamr13’
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... NOTE
Packages unavailable to check Rd xrefs: ‘dplR’, ‘multilevel’
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [15s/15s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
NOTE: There were 4 notes.
See
‘/home/biocbuild/bbs-3.0-bioc/meat/genefu.Rcheck/00check.log’
for details.