Back to the "Multiple platform build/check report" A  B [C] D  E  F  G  H  I  J  K  L  M  N  O  P  Q  R  S  T  U  V  W  X  Y  Z 

BioC 3.0: BUILD BIN report for csaw on perceval

This page was generated on 2015-04-10 10:00:36 -0700 (Fri, 10 Apr 2015).

Package 212/933HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
csaw 1.0.7
Aaron Lun
Snapshot Date: 2015-04-09 16:20:12 -0700 (Thu, 09 Apr 2015)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_0/madman/Rpacks/csaw
Last Changed Rev: 100522 / Revision: 102249
Last Changed Date: 2015-03-11 01:21:59 -0700 (Wed, 11 Mar 2015)
zin1 Linux (Ubuntu 12.04.4 LTS) / x86_64  NotNeeded  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  NotNeeded  OK  OK  OK 
perceval Mac OS X Snow Leopard (10.6.8) / x86_64  NotNeeded  OK  OK [ OK ]
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded  OK  OK  OK 

Summary

Package: csaw
Version: 1.0.7
Command: rm -rf csaw.buildbin-libdir && mkdir csaw.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh csaw_1.0.7.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R csaw.buildbin-libdir
StartedAt: 2015-04-10 08:05:43 -0700 (Fri, 10 Apr 2015)
EndedAt: 2015-04-10 08:06:30 -0700 (Fri, 10 Apr 2015)
EllapsedTime: 46.1 seconds
RetCode: 0
Status:  OK 
PackageFile: csaw_1.0.7.tgz
PackageFileSize: 1.293 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf csaw.buildbin-libdir && mkdir csaw.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh csaw_1.0.7.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R csaw.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=csaw.buildbin-libdir csaw_1.0.7.tar.gz'
>>>>>>> 

* installing *source* package ‘csaw’ ...
** libs
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include    -fPIC  -mtune=core2 -g -O2 -Wall  -c annotator.cpp -o annotator.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include    -fPIC  -mtune=core2 -g -O2 -Wall  -c best_in_cluster.cpp -o best_in_cluster.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include    -fPIC  -mtune=core2 -g -O2 -Wall  -c correlate_reads.cpp -o correlate_reads.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include    -fPIC  -mtune=core2 -g -O2 -Wall  -c get_cluster_stats.cpp -o get_cluster_stats.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include    -fPIC  -mtune=core2 -g -O2 -Wall  -c get_rle_counts.cpp -o get_rle_counts.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include    -fPIC  -mtune=core2 -g -O2 -Wall  -c init.cpp -o init.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include    -fPIC  -mtune=core2 -g -O2 -Wall  -c merge_windows.cpp -o merge_windows.o
llvm-g++-4.2 -arch x86_64 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -L/usr/local/lib -o csaw.so annotator.o best_in_cluster.o correlate_reads.o get_cluster_stats.o get_rle_counts.o init.o merge_windows.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.0-bioc/meat/csaw.buildbin-libdir/csaw/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (csaw)


>>>>>>> 
>>>>>>> FIXING LINKS FOR csaw.buildbin-libdir/csaw/libs//csaw.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.1/Resources/lib/libgcc_s.1.dylib" "csaw.buildbin-libdir/csaw/libs//csaw.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/3.1/Resources/lib/libgfortran.2.dylib" "csaw.buildbin-libdir/csaw/libs//csaw.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.1/Resources/lib/libreadline.5.2.dylib" "csaw.buildbin-libdir/csaw/libs//csaw.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.1/Resources/lib/libreadline.dylib" "csaw.buildbin-libdir/csaw/libs//csaw.so"