VariantAnnotation 1.12.9
Valerie Obenchain
| Snapshot Date: 2015-04-09 16:20:12 -0700 (Thu, 09 Apr 2015) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_0/madman/Rpacks/VariantAnnotation | | Last Changed Rev: 98524 / Revision: 102249 | | Last Changed Date: 2015-01-20 14:44:33 -0800 (Tue, 20 Jan 2015) |
| zin1 | Linux (Ubuntu 12.04.4 LTS) / x86_64 | OK | OK | WARNINGS | |
| moscato1 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | OK | WARNINGS | [ OK ] |
| perceval | Mac OS X Snow Leopard (10.6.8) / x86_64 | OK | OK | WARNINGS | OK |
| oaxaca | Mac OS X Mavericks (10.9.5) / x86_64 | OK | OK | WARNINGS | OK |
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### Running command:
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### cd VariantAnnotation.buildbin-libdir/VariantAnnotation && zip -r ../../VariantAnnotation_1.12.9.zip . & cd ../..
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adding: CITATION (188 bytes security) (deflated 56%)
adding: DESCRIPTION (188 bytes security) (deflated 48%)
adding: doc/ (256 bytes security) (stored 0%)
adding: doc/filterVcf.pdf (188 bytes security) (deflated 10%)
adding: doc/filterVcf.R (188 bytes security) (deflated 68%)
adding: doc/filterVcf.Rnw (188 bytes security) (deflated 60%)
adding: doc/index.html (188 bytes security) (deflated 68%)
adding: doc/VariantAnnotation.pdf (188 bytes security) (deflated 17%)
adding: doc/VariantAnnotation.R (188 bytes security) (deflated 77%)
adding: doc/VariantAnnotation.Rnw (188 bytes security) (deflated 62%)
adding: extdata/ (256 bytes security) (stored 0%)
adding: extdata/chr22.vcf.gz (188 bytes security) (deflated 0%)
adding: extdata/chr22.vcf.gz.tbi (188 bytes security) (deflated 3%)
adding: extdata/chr7-sub.vcf.gz (188 bytes security) (deflated 0%)
adding: extdata/chr7-sub.vcf.gz.tbi (188 bytes security) (deflated 5%)
adding: extdata/ex2.vcf (188 bytes security) (deflated 52%)
adding: extdata/gl_chr1.vcf (188 bytes security) (deflated 80%)
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adding: extdata/h1187-10k.vcf.gz.tbi (188 bytes security) (stored 0%)
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adding: help/VariantAnnotation.rdb (188 bytes security) (deflated 1%)
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adding: html/00Index.html (188 bytes security) (deflated 91%)
adding: html/R.css (188 bytes security) (deflated 70%)
adding: INDEX (188 bytes security) (deflated 65%)
adding: libs/ (256 bytes security) (stored 0%)
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adding: libs/i386/VariantAnnotation.dll (188 bytes security) (deflated 54%)
adding: libs/x64/ (256 bytes security) (stored 0%)
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adding: NAMESPACE (188 bytes security) (deflated 63%)
adding: NEWS (188 bytes security) (deflated 63%)
adding: R/ (256 bytes security) (stored 0%)
adding: R/VariantAnnotation (188 bytes security) (deflated 41%)
adding: R/VariantAnnotation.rdb (188 bytes security) (deflated 36%)
adding: R/VariantAnnotation.rdx (188 bytes security) (deflated 4%)
adding: scripts/ (256 bytes security) (stored 0%)
adding: scripts/test_Rplinkseq.R (188 bytes security) (deflated 68%)
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adding: unitTests/cases/banded_gvcf.vcf (188 bytes security) (deflated 63%)
adding: unitTests/cases/expand.vcf (188 bytes security) (deflated 68%)
adding: unitTests/cases/fewer-FORMAT-than-GENO.vcf (188 bytes security) (deflated 45%)
adding: unitTests/cases/FORMAT_header_no_SAMPLEs.vcf (188 bytes security) (deflated 47%)
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adding: unitTests/cases/negative_FORMAT_Number.vcf (188 bytes security) (deflated 64%)
adding: unitTests/cases/no_FORMAT_column.vcf (188 bytes security) (deflated 31%)
adding: unitTests/cases/no_GENO_row.vcf (188 bytes security) (deflated 43%)
adding: unitTests/cases/no_INFO_header.vcf (188 bytes security) (deflated 36%)
adding: unitTests/cases/unspecified_INFO_FORMAT_fields.vcf (188 bytes security) (deflated 51%)
adding: unitTests/cases/VarScan_header.vcf (188 bytes security) (deflated 58%)
adding: unitTests/test_expand-methods.R (188 bytes security) (deflated 70%)
adding: unitTests/test_filterVcf.R (188 bytes security) (deflated 79%)
adding: unitTests/test_genotypeToSnpMatrix.R (188 bytes security) (deflated 78%)
adding: unitTests/test_isSNV.R (188 bytes security) (deflated 77%)
adding: unitTests/test_locateVariants-methods.R (188 bytes security) (deflated 76%)
adding: unitTests/test_predictCoding-methods.R (188 bytes security) (deflated 77%)
adding: unitTests/test_readVcf-methods.R (188 bytes security) (deflated 74%)
adding: unitTests/test_scanVcf.R (188 bytes security) (deflated 68%)
adding: unitTests/test_ScanVcfParam-class.R (188 bytes security) (deflated 73%)
adding: unitTests/test_SIFTandPolyPhen.R (188 bytes security) (deflated 69%)
adding: unitTests/test_snpSummary.R (188 bytes security) (deflated 66%)
adding: unitTests/test_summarizeVariants-methods.R (188 bytes security) (deflated 49%)
adding: unitTests/test_VCF-class.R (188 bytes security) (deflated 78%)
adding: unitTests/test_VRanges-class.R (188 bytes security) (deflated 76%)
adding: unitTests/test_writeVcf-methods.R (188 bytes security) (deflated 79%)