Back to the "Multiple platform build/check report" A  B  C  D  E  F  G  H  I  J  K  L  M  N  O  P  Q  R [S] T  U  V  W  X  Y  Z 

BioC 3.0: INSTALL report for SeqArray on zin1

This page was generated on 2015-04-10 09:40:42 -0700 (Fri, 10 Apr 2015).

Package 808/933HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
SeqArray 1.6.1
Xiuwen Zheng
Snapshot Date: 2015-04-09 16:20:12 -0700 (Thu, 09 Apr 2015)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_0/madman/Rpacks/SeqArray
Last Changed Rev: 98378 / Revision: 102249
Last Changed Date: 2015-01-15 13:30:03 -0800 (Thu, 15 Jan 2015)
zin1 Linux (Ubuntu 12.04.4 LTS) / x86_64 [ OK ] OK  OK 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK  OK 
perceval Mac OS X Snow Leopard (10.6.8) / x86_64  OK  OK  OK  OK 
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  OK  OK 

Summary

Package: SeqArray
Version: 1.6.1
Command: /home/biocbuild/bbs-3.0-bioc/R/bin/R CMD INSTALL SeqArray
StartedAt: 2015-04-09 17:12:34 -0700 (Thu, 09 Apr 2015)
EndedAt: 2015-04-09 17:13:08 -0700 (Thu, 09 Apr 2015)
EllapsedTime: 34.8 seconds
RetCode: 0
Status:  OK 

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.0-bioc/R/bin/R CMD INSTALL SeqArray
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.0-bioc/R/library’
* installing *source* package ‘SeqArray’ ...
** libs
g++ -I/home/biocbuild/bbs-3.0-bioc/R/include -DNDEBUG -I. -DUSING_R -I/usr/local/include -I"/home/biocbuild/bbs-3.0-bioc/R/library/gdsfmt/include"   -fpic  -g -O2  -Wall -c ConvGDS2VCF.cpp -o ConvGDS2VCF.o
g++ -I/home/biocbuild/bbs-3.0-bioc/R/include -DNDEBUG -I. -DUSING_R -I/usr/local/include -I"/home/biocbuild/bbs-3.0-bioc/R/library/gdsfmt/include"   -fpic  -g -O2  -Wall -c ConvVCF2GDS.cpp -o ConvVCF2GDS.o
ConvVCF2GDS.cpp: In function ‘SEXPREC* sqa_Parse_VCF4(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’:
ConvVCF2GDS.cpp:767:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
ConvVCF2GDS.cpp:793:41: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
ConvVCF2GDS.cpp:860:41: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
gcc -std=gnu99 -I/home/biocbuild/bbs-3.0-bioc/R/include -DNDEBUG -I. -DUSING_R -I/usr/local/include -I"/home/biocbuild/bbs-3.0-bioc/R/library/gdsfmt/include"   -fpic  -g -O2  -Wall -c R_SeqArray.c -o R_SeqArray.o
g++ -I/home/biocbuild/bbs-3.0-bioc/R/include -DNDEBUG -I. -DUSING_R -I/usr/local/include -I"/home/biocbuild/bbs-3.0-bioc/R/library/gdsfmt/include"   -fpic  -g -O2  -Wall -c ReadByVariant.cpp -o ReadByVariant.o
g++ -I/home/biocbuild/bbs-3.0-bioc/R/include -DNDEBUG -I. -DUSING_R -I/usr/local/include -I"/home/biocbuild/bbs-3.0-bioc/R/library/gdsfmt/include"   -fpic  -g -O2  -Wall -c SeqArray.cpp -o SeqArray.o
g++ -shared -L/home/biocbuild/bbs-3.0-bioc/R/lib -L/usr/local/lib -o SeqArray.so ConvGDS2VCF.o ConvVCF2GDS.o R_SeqArray.o ReadByVariant.o SeqArray.o -L/home/biocbuild/bbs-3.0-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.0-bioc/R/library/SeqArray/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   ‘SeqArrayTutorial.Rnw’ 
** testing if installed package can be loaded
* DONE (SeqArray)