Rgraphviz 2.10.0
Kasper Daniel Hansen
| Snapshot Date: 2015-04-09 16:20:12 -0700 (Thu, 09 Apr 2015) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_0/madman/Rpacks/Rgraphviz | | Last Changed Rev: 95439 / Revision: 102249 | | Last Changed Date: 2014-10-13 14:38:33 -0700 (Mon, 13 Oct 2014) |
| zin1 | Linux (Ubuntu 12.04.4 LTS) / x86_64 | OK | OK | OK | |
| moscato1 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | OK | OK | OK |
| perceval | Mac OS X Snow Leopard (10.6.8) / x86_64 | [ OK ] | OK | OK | OK |
| oaxaca | Mac OS X Mavericks (10.9.5) / x86_64 | OK | OK | OK | OK |
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### Running command:
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### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL Rgraphviz
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* installing to library ‘/Library/Frameworks/R.framework/Versions/3.1/Resources/library’
* installing *source* package ‘Rgraphviz’ ...
configure: Using bundled Graphviz.
configure: Searching for the compilers specified by R.
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configure: Preparing to compile Graphviz.
configure: Configuring bundled Graphviz.
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=== configuring in libltdl (/Users/biocbuild/bbs-3.0-bioc/meat/Rgraphviz/src/graphviz/libltdl)
configure: running /bin/sh ./configure --disable-option-checking '--prefix=/Users/biocbuild/bbs-3.0-bioc/meat/Rgraphviz/src/libunix' 'CC=llvm-gcc-4.2 -arch x86_64 -std=gnu99' 'CXX=llvm-g++-4.2 -arch x86_64' 'CFLAGS=-mtune=core2 -g -O2 -Wall' 'CXXFLAGS=-mtune=core2 -g -O2 -Wall' 'LDFLAGS=-L/usr/local/lib -L/usr/local/lib' '--libdir=/Users/biocbuild/bbs-3.0-bioc/meat/Rgraphviz/src/libunix/lib' '--includedir=/Users/biocbuild/bbs-3.0-bioc/meat/Rgraphviz/src/libunix/include' '--with-cgraph=no' '--enable-swig=no' '--enable-static' '--disable-shared' '--with-pic' '--with-libgd=no' '--disable-ltdl' '--without-x' '--without-expat' '--without-devil' '--without-rsvg' '--without-ghostscript' '--without-visio' '--without-pangocairo' '--without-lasi' '--without-glitz' '--without-freetype2' '--without-fontconfig' '--without-rpat' '--without-glut' '--without-gts' '--without-png' '--without-tcl' '--without-jpeg' 'PKG_CONFIG_PATH=/Library/Frameworks/GTK+.framework/Resources/lib/pkgconfig:/usr/lib/pkgconfig:/usr/local/lib/pkgconfig:/usr/X11/lib/pkgconfig:/usr/local/ggobi/lib/pkgconfig' '--enable-ltdl-convenience' --cache-file=/dev/null --srcdir=.
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----------------------------------------------------------------
graphviz-2.28.0 will be compiled with the following:
options:
cgraph: No (disabled by default - experimental)
digcola: Yes
expat: No (disabled)
fontconfig: No (disabled)
freetype: No (disabled)
glut: No (disabled)
gts: No (disabled)
ipsepcola: No (disabled by default - C++ portability issues)
ltdl: No (disabled)
ortho: Yes
png: No (disabled)
jpeg: No (disabled)
sfdp: Yes
shared: No (disabled)
static: Yes
qt: No (qmake not found)
commands:
dot: Yes (always enabled)
neato: Yes (always enabled)
fdp: Yes (always enabled)
circo: Yes (always enabled)
twopi: Yes (always enabled)
gvpr: Yes (always enabled)
gvmap: Yes (always enabled)
lefty: No (missing Xaw library)
smyrna: No (disabled by default - experimental)
gvedit: No (qmake not found)
plugin libraries:
dot_layout: Yes (always enabled)
neato_layout: Yes (always enabled)
core: Yes (always enabled)
devil: No (disabled)
gd: No (disabled)
gdiplus: No (disabled by default - Windows only)
gdk_pixbuf: Yes
ghostscript: No (disabled)
glitz: No (disabled by default - incomplete)
gtk: Yes
lasi: No (disabled)
ming: No (disabled by default - incomplete)
pangocairo: No (disabled)
quartz: No (disabled by default - Mac only)
rsvg: No (disabled)
visio: No (disabled by default - experimental)
xlib: No (disabled or unavailable)
language extensions:
gv_sharp: No (swig not available)
gv_go: No (disabled by default - experimental)
gv_guile: No (swig not available)
gv_io: No (disabled by default - no swig support yet)
gv_java: No (swig not available)
gv_lua: No (swig not available)
gv_ocaml: No (swig not available)
gv_perl: No (swig not available)
gv_php: No (swig not available)
gv_python: No (swig not available)
gv_python23: No (disabled by default - for multiversion installs)
gv_python24: No (disabled by default - for multiversion installs)
gv_python25: No (disabled by default - for multiversion installs)
gv_python26: No (disabled by default - for multiversion installs)
gv_python27: No (disabled by default - for multiversion installs)
gv_R: No (swig not available)
gv_ruby: No (swig not available)
gv_tcl: No (swig not available)
tcldot: Yes
tclpathplan: Yes
gdtclft: No (gd not available)
tkspline: Yes
grep 'PACKAGE\|VERSION\|GVPLUGIN' config.h > graphviz_version.h
make install-recursive
Making install in libltdl
/bin/sh /Users/biocbuild/bbs-3.0-bioc/meat/Rgraphviz/src/graphviz/libltdl/config/install-sh -d .
cp ./argz_.h argz.h-t
mv argz.h-t argz.h
make install-am
/bin/sh ./libtool --tag=CC --mode=compile llvm-gcc-4.2 -arch x86_64 -std=gnu99 -DHAVE_CONFIG_H -I. -DLT_CONFIG_H='<config.h>' -DLTDL -I. -I. -Ilibltdl -I./libltdl -I./libltdl -mtune=core2 -g -O2 -Wall -MT dlopen.lo -MD -MP -MF .deps/dlopen.Tpo -c -o dlopen.lo `test -f 'loaders/dlopen.c' || echo './'`loaders/dlopen.c
libtool: compile: llvm-gcc-4.2 -arch x86_64 -std=gnu99 -DHAVE_CONFIG_H -I. "-DLT_CONFIG_H=<config.h>" -DLTDL -I. -I. -Ilibltdl -I./libltdl -I./libltdl -mtune=core2 -g -O2 -Wall -MT dlopen.lo -MD -MP -MF .deps/dlopen.Tpo -c loaders/dlopen.c -fno-common -DPIC -o dlopen.o
mv -f .deps/dlopen.Tpo .deps/dlopen.Plo
/bin/sh ./libtool --tag=CC --mode=link llvm-gcc-4.2 -arch x86_64 -std=gnu99 -mtune=core2 -g -O2 -Wall -module -avoid-version -L/usr/local/lib -L/usr/local/lib -o dlopen.la dlopen.lo
libtool: link: ar cru .libs/dlopen.a dlopen.o
libtool: link: ranlib .libs/dlopen.a
libtool: link: ( cd ".libs" && rm -f "dlopen.la" && ln -s "../dlopen.la" "dlopen.la" )
/bin/sh ./libtool --tag=CC --mode=compile llvm-gcc-4.2 -arch x86_64 -std=gnu99 -DHAVE_CONFIG_H -I. -DLTDLOPEN=libltdlc -DLT_CONFIG_H='<config.h>' -DLTDL -I. -I. -Ilibltdl -I./libltdl -I./libltdl -mtune=core2 -g -O2 -Wall -MT libltdlc_la-preopen.lo -MD -MP -MF .deps/libltdlc_la-preopen.Tpo -c -o libltdlc_la-preopen.lo `test -f 'loaders/preopen.c' || echo './'`loaders/preopen.c
libtool: compile: llvm-gcc-4.2 -arch x86_64 -std=gnu99 -DHAVE_CONFIG_H -I. -DLTDLOPEN=libltdlc "-DLT_CONFIG_H=<config.h>" -DLTDL -I. -I. -Ilibltdl -I./libltdl -I./libltdl -mtune=core2 -g -O2 -Wall -MT libltdlc_la-preopen.lo -MD -MP -MF .deps/libltdlc_la-preopen.Tpo -c loaders/preopen.c -fno-common -DPIC -o libltdlc_la-preopen.o
mv -f .deps/libltdlc_la-preopen.Tpo .deps/libltdlc_la-preopen.Plo
/bin/sh ./libtool --tag=CC --mode=compile llvm-gcc-4.2 -arch x86_64 -std=gnu99 -DHAVE_CONFIG_H -I. -DLTDLOPEN=libltdlc -DLT_CONFIG_H='<config.h>' -DLTDL -I. -I. -Ilibltdl -I./libltdl -I./libltdl -mtune=core2 -g -O2 -Wall -MT libltdlc_la-lt__alloc.lo -MD -MP -MF .deps/libltdlc_la-lt__alloc.Tpo -c -o libltdlc_la-lt__alloc.lo `test -f 'lt__alloc.c' || echo './'`lt__alloc.c
libtool: compile: llvm-gcc-4.2 -arch x86_64 -std=gnu99 -DHAVE_CONFIG_H -I. -DLTDLOPEN=libltdlc "-DLT_CONFIG_H=<config.h>" -DLTDL -I. -I. -Ilibltdl -I./libltdl -I./libltdl -mtune=core2 -g -O2 -Wall -MT libltdlc_la-lt__alloc.lo -MD -MP -MF .deps/libltdlc_la-lt__alloc.Tpo -c lt__alloc.c -fno-common -DPIC -o libltdlc_la-lt__alloc.o
mv -f .deps/libltdlc_la-lt__alloc.Tpo .deps/libltdlc_la-lt__alloc.Plo
/bin/sh ./libtool --tag=CC --mode=compile llvm-gcc-4.2 -arch x86_64 -std=gnu99 -DHAVE_CONFIG_H -I. -DLTDLOPEN=libltdlc -DLT_CONFIG_H='<config.h>' -DLTDL -I. -I. -Ilibltdl -I./libltdl -I./libltdl -mtune=core2 -g -O2 -Wall -MT libltdlc_la-lt_dlloader.lo -MD -MP -MF .deps/libltdlc_la-lt_dlloader.Tpo -c -o libltdlc_la-lt_dlloader.lo `test -f 'lt_dlloader.c' || echo './'`lt_dlloader.c
libtool: compile: llvm-gcc-4.2 -arch x86_64 -std=gnu99 -DHAVE_CONFIG_H -I. -DLTDLOPEN=libltdlc "-DLT_CONFIG_H=<config.h>" -DLTDL -I. -I. -Ilibltdl -I./libltdl -I./libltdl -mtune=core2 -g -O2 -Wall -MT libltdlc_la-lt_dlloader.lo -MD -MP -MF .deps/libltdlc_la-lt_dlloader.Tpo -c lt_dlloader.c -fno-common -DPIC -o libltdlc_la-lt_dlloader.o
mv -f .deps/libltdlc_la-lt_dlloader.Tpo .deps/libltdlc_la-lt_dlloader.Plo
/bin/sh ./libtool --tag=CC --mode=compile llvm-gcc-4.2 -arch x86_64 -std=gnu99 -DHAVE_CONFIG_H -I. -DLTDLOPEN=libltdlc -DLT_CONFIG_H='<config.h>' -DLTDL -I. -I. -Ilibltdl -I./libltdl -I./libltdl -mtune=core2 -g -O2 -Wall -MT libltdlc_la-lt_error.lo -MD -MP -MF .deps/libltdlc_la-lt_error.Tpo -c -o libltdlc_la-lt_error.lo `test -f 'lt_error.c' || echo './'`lt_error.c
libtool: compile: llvm-gcc-4.2 -arch x86_64 -std=gnu99 -DHAVE_CONFIG_H -I. -DLTDLOPEN=libltdlc "-DLT_CONFIG_H=<config.h>" -DLTDL -I. -I. -Ilibltdl -I./libltdl -I./libltdl -mtune=core2 -g -O2 -Wall -MT libltdlc_la-lt_error.lo -MD -MP -MF .deps/libltdlc_la-lt_error.Tpo -c lt_error.c -fno-common -DPIC -o libltdlc_la-lt_error.o
mv -f .deps/libltdlc_la-lt_error.Tpo .deps/libltdlc_la-lt_error.Plo
/bin/sh ./libtool --tag=CC --mode=compile llvm-gcc-4.2 -arch x86_64 -std=gnu99 -DHAVE_CONFIG_H -I. -DLTDLOPEN=libltdlc -DLT_CONFIG_H='<config.h>' -DLTDL -I. -I. -Ilibltdl -I./libltdl -I./libltdl -mtune=core2 -g -O2 -Wall -MT libltdlc_la-ltdl.lo -MD -MP -MF .deps/libltdlc_la-ltdl.Tpo -c -o libltdlc_la-ltdl.lo `test -f 'ltdl.c' || echo './'`ltdl.c
libtool: compile: llvm-gcc-4.2 -arch x86_64 -std=gnu99 -DHAVE_CONFIG_H -I. -DLTDLOPEN=libltdlc "-DLT_CONFIG_H=<config.h>" -DLTDL -I. -I. -Ilibltdl -I./libltdl -I./libltdl -mtune=core2 -g -O2 -Wall -MT libltdlc_la-ltdl.lo -MD -MP -MF .deps/libltdlc_la-ltdl.Tpo -c ltdl.c -fno-common -DPIC -o libltdlc_la-ltdl.o
ltdl.c: In function 'try_dlopen':
ltdl.c:1268: warning: the address of 'libext' will always evaluate as 'true'
mv -f .deps/libltdlc_la-ltdl.Tpo .deps/libltdlc_la-ltdl.Plo
/bin/sh ./libtool --tag=CC --mode=compile llvm-gcc-4.2 -arch x86_64 -std=gnu99 -DHAVE_CONFIG_H -I. -DLTDLOPEN=libltdlc -DLT_CONFIG_H='<config.h>' -DLTDL -I. -I. -Ilibltdl -I./libltdl -I./libltdl -mtune=core2 -g -O2 -Wall -MT libltdlc_la-slist.lo -MD -MP -MF .deps/libltdlc_la-slist.Tpo -c -o libltdlc_la-slist.lo `test -f 'slist.c' || echo './'`slist.c
libtool: compile: llvm-gcc-4.2 -arch x86_64 -std=gnu99 -DHAVE_CONFIG_H -I. -DLTDLOPEN=libltdlc "-DLT_CONFIG_H=<config.h>" -DLTDL -I. -I. -Ilibltdl -I./libltdl -I./libltdl -mtune=core2 -g -O2 -Wall -MT libltdlc_la-slist.lo -MD -MP -MF .deps/libltdlc_la-slist.Tpo -c slist.c -fno-common -DPIC -o libltdlc_la-slist.o
mv -f .deps/libltdlc_la-slist.Tpo .deps/libltdlc_la-slist.Plo
/bin/sh ./libtool --tag=CC --mode=compile llvm-gcc-4.2 -arch x86_64 -std=gnu99 -DHAVE_CONFIG_H -I. -DLT_CONFIG_H='<config.h>' -DLTDL -I. -I. -Ilibltdl -I./libltdl -I./libltdl -mtune=core2 -g -O2 -Wall -MT argz.lo -MD -MP -MF .deps/argz.Tpo -c -o argz.lo argz.c
libtool: compile: llvm-gcc-4.2 -arch x86_64 -std=gnu99 -DHAVE_CONFIG_H -I. "-DLT_CONFIG_H=<config.h>" -DLTDL -I. -I. -Ilibltdl -I./libltdl -I./libltdl -mtune=core2 -g -O2 -Wall -MT argz.lo -MD -MP -MF .deps/argz.Tpo -c argz.c -fno-common -DPIC -o argz.o
mv -f .deps/argz.Tpo .deps/argz.Plo
/bin/sh ./libtool --tag=CC --mode=link llvm-gcc-4.2 -arch x86_64 -std=gnu99 -mtune=core2 -g -O2 -Wall -no-undefined -dlpreopen dlopen.la -L/usr/local/lib -L/usr/local/lib -o libltdlc.la libltdlc_la-preopen.lo libltdlc_la-lt__alloc.lo libltdlc_la-lt_dlloader.lo libltdlc_la-lt_error.lo libltdlc_la-ltdl.lo libltdlc_la-slist.lo argz.lo
libtool: link: rm -f .libs/libltdlc.nm .libs/libltdlc.nmS .libs/libltdlc.nmT
libtool: link: (cd .libs && llvm-gcc-4.2 -arch x86_64 -std=gnu99 -mtune=core2 -g -O2 -Wall -c -fno-builtin -fno-common -DPIC "libltdlcS.c")
libtool: link: rm -f ".libs/libltdlcS.c" ".libs/libltdlc.nm" ".libs/libltdlc.nmS" ".libs/libltdlc.nmT"
libtool: link: (cd .libs/libltdlc.lax/dlopen.a && ar x "/Users/biocbuild/bbs-3.0-bioc/meat/Rgraphviz/src/graphviz/libltdl/./.libs/dlopen.a")
libtool: link: ar cru .libs/libltdlc.a libltdlc_la-preopen.o libltdlc_la-lt__alloc.o libltdlc_la-lt_dlloader.o libltdlc_la-lt_error.o libltdlc_la-ltdl.o libltdlc_la-slist.o argz.o .libs/libltdlcS.o .libs/libltdlc.lax/dlopen.a/dlopen.o
libtool: link: ranlib .libs/libltdlc.a
libtool: link: rm -fr .libs/libltdlc.lax
libtool: link: ( cd ".libs" && rm -f "libltdlc.la" && ln -s "../libltdlc.la" "libltdlc.la" )
Making install in lib
Making install in cdt
CC dtclose.lo
CC dtdisc.lo
CC dtextract.lo
CC dtflatten.lo
CC dthash.lo
CC dtlist.lo
CC dtmethod.lo
CC dtopen.lo
CC dtrenew.lo
CC dtrestore.lo
CC dtsize.lo
CC dtstat.lo
CC dtstrhash.lo
CC dttree.lo
CC dttreeset.lo
CC dtview.lo
CC dtwalk.lo
CCLD libcdt.la
CCLD libcdt_C.la
../../config/install-sh -c -d '/Users/biocbuild/bbs-3.0-bioc/meat/Rgraphviz/src/libunix/lib'
/bin/sh ../../libtool --mode=install /usr/bin/install -c libcdt.la '/Users/biocbuild/bbs-3.0-bioc/meat/Rgraphviz/src/libunix/lib'
libtool: install: /usr/bin/install -c .libs/libcdt.lai /Users/biocbuild/bbs-3.0-bioc/meat/Rgraphviz/src/libunix/lib/libcdt.la
libtool: install: /usr/bin/install -c .libs/libcdt.a /Users/biocbuild/bbs-3.0-bioc/meat/Rgraphviz/src/libunix/lib/libcdt.a
libtool: install: chmod 644 /Users/biocbuild/bbs-3.0-bioc/meat/Rgraphviz/src/libunix/lib/libcdt.a
libtool: install: ranlib /Users/biocbuild/bbs-3.0-bioc/meat/Rgraphviz/src/libunix/lib/libcdt.a
----------------------------------------------------------------------
Libraries have been installed in:
/Users/biocbuild/bbs-3.0-bioc/meat/Rgraphviz/src/libunix/lib
If you ever happen to want to link against installed libraries
in a given directory, LIBDIR, you must either use libtool, and
specify the full pathname of the library, or use the `-LLIBDIR'
flag during linking and do at least one of the following:
- add LIBDIR to the `DYLD_LIBRARY_PATH' environment variable
during execution
See any operating system documentation about shared libraries for
more information, such as the ld(1) and ld.so(8) manual pages.
----------------------------------------------------------------------
../../config/install-sh -c -d '/Users/biocbuild/bbs-3.0-bioc/meat/Rgraphviz/src/libunix/share/man/man3'
/usr/bin/install -c -m 644 cdt.3 '/Users/biocbuild/bbs-3.0-bioc/meat/Rgraphviz/src/libunix/share/man/man3'
../../config/install-sh -c -d '/Users/biocbuild/bbs-3.0-bioc/meat/Rgraphviz/src/libunix/share/graphviz/doc/pdf'
/usr/bin/install -c -m 644 cdt.3.pdf '/Users/biocbuild/bbs-3.0-bioc/meat/Rgraphviz/src/libunix/share/graphviz/doc/pdf'
../../config/install-sh -c -d '/Users/biocbuild/bbs-3.0-bioc/meat/Rgraphviz/src/libunix/lib/pkgconfig'
/usr/bin/install -c -m 644 libcdt.pc '/Users/biocbuild/bbs-3.0-bioc/meat/Rgraphviz/src/libunix/lib/pkgconfig'
../../config/install-sh -c -d '/Users/biocbuild/bbs-3.0-bioc/meat/Rgraphviz/src/libunix/include/graphviz'
/usr/bin/install -c -m 644 cdt.h '/Users/biocbuild/bbs-3.0-bioc/meat/Rgraphviz/src/libunix/include/graphviz'
Making install in graph
CC attribs.lo
CC agxbuf.lo
CC edge.lo
CC graph.lo
CC graphio.lo
CC lexer.lo
lexer.c: In function 'scan_token':
lexer.c:147: warning: pointer targets in return differ in signedness
lexer.c: In function 'aglex':
lexer.c:435: warning: pointer targets in passing argument 1 of 'scan_token' differ in signedness
lexer.c:435: warning: pointer targets in passing argument 2 of 'scan_token' differ in signedness
CC node.lo
CC parser.lo
CC refstr.lo
CC trie.lo
CCLD libgraph.la
CCLD libgraph_C.la
../../config/install-sh -c -d '/Users/biocbuild/bbs-3.0-bioc/meat/Rgraphviz/src/libunix/lib'
/bin/sh ../../libtool --mode=install /usr/bin/install -c libgraph.la '/Users/biocbuild/bbs-3.0-bioc/meat/Rgraphviz/src/libunix/lib'
libtool: install: /usr/bin/install -c .libs/libgraph.lai /Users/biocbuild/bbs-3.0-bioc/meat/Rgraphviz/src/libunix/lib/libgraph.la
libtool: install: /usr/bin/install -c .libs/libgraph.a /Users/biocbuild/bbs-3.0-bioc/meat/Rgraphviz/src/libunix/lib/libgraph.a
libtool: install: chmod 644 /Users/biocbuild/bbs-3.0-bioc/meat/Rgraphviz/src/libunix/lib/libgraph.a
libtool: install: ranlib /Users/biocbuild/bbs-3.0-bioc/meat/Rgraphviz/src/libunix/lib/libgraph.a
----------------------------------------------------------------------
Libraries have been installed in:
/Users/biocbuild/bbs-3.0-bioc/meat/Rgraphviz/src/libunix/lib
If you ever happen to want to link against installed libraries
in a given directory, LIBDIR, you must either use libtool, and
specify the full pathname of the library, or use the `-LLIBDIR'
flag during linking and do at least one of the following:
- add LIBDIR to the `DYLD_LIBRARY_PATH' environment variable
during execution
See any operating system documentation about shared libraries for
more information, such as the ld(1) and ld.so(8) manual pages.
----------------------------------------------------------------------
../../config/install-sh -c -d '/Users/biocbuild/bbs-3.0-bioc/meat/Rgraphviz/src/libunix/share/man/man3'
/usr/bin/install -c -m 644 graph.3 '/Users/biocbuild/bbs-3.0-bioc/meat/Rgraphviz/src/libunix/share/man/man3'
../../config/install-sh -c -d '/Users/biocbuild/bbs-3.0-bioc/meat/Rgraphviz/src/libunix/share/graphviz/doc/pdf'
/usr/bin/install -c -m 644 graph.3.pdf '/Users/biocbuild/bbs-3.0-bioc/meat/Rgraphviz/src/libunix/share/graphviz/doc/pdf'
../../config/install-sh -c -d '/Users/biocbuild/bbs-3.0-bioc/meat/Rgraphviz/src/libunix/lib/pkgconfig'
/usr/bin/install -c -m 644 libgraph.pc '/Users/biocbuild/bbs-3.0-bioc/meat/Rgraphviz/src/libunix/lib/pkgconfig'
../../config/install-sh -c -d '/Users/biocbuild/bbs-3.0-bioc/meat/Rgraphviz/src/libunix/include/graphviz'
/usr/bin/install -c -m 644 graph.h '/Users/biocbuild/bbs-3.0-bioc/meat/Rgraphviz/src/libunix/include/graphviz'
Making install in pathplan
CC cvt.lo
CC inpoly.lo
CC route.lo
CC shortest.lo
CC shortestpth.lo
CC solvers.lo
CC triang.lo
CC util.lo
CC visibility.lo
CCLD libpathplan.la
CCLD libpathplan_C.la
../../config/install-sh -c -d '/Users/biocbuild/bbs-3.0-bioc/meat/Rgraphviz/src/libunix/lib'
/bin/sh ../../libtool --mode=install /usr/bin/install -c libpathplan.la '/Users/biocbuild/bbs-3.0-bioc/meat/Rgraphviz/src/libunix/lib'
libtool: install: /usr/bin/install -c .libs/libpathplan.lai /Users/biocbuild/bbs-3.0-bioc/meat/Rgraphviz/src/libunix/lib/libpathplan.la
libtool: install: /usr/bin/install -c .libs/libpathplan.a /Users/biocbuild/bbs-3.0-bioc/meat/Rgraphviz/src/libunix/lib/libpathplan.a
libtool: install: chmod 644 /Users/biocbuild/bbs-3.0-bioc/meat/Rgraphviz/src/libunix/lib/libpathplan.a
libtool: install: ranlib /Users/biocbuild/bbs-3.0-bioc/meat/Rgraphviz/src/libunix/lib/libpathplan.a
----------------------------------------------------------------------
Libraries have been installed in:
/Users/biocbuild/bbs-3.0-bioc/meat/Rgraphviz/src/libunix/lib
If you ever happen to want to link against installed libraries
in a given directory, LIBDIR, you must either use libtool, and
specify the full pathname of the library, or use the `-LLIBDIR'
flag during linking and do at least one of the following:
- add LIBDIR to the `DYLD_LIBRARY_PATH' environment variable
during execution
See any operating system documentation about shared libraries for
more information, such as the ld(1) and ld.so(8) manual pages.
----------------------------------------------------------------------
../../config/install-sh -c -d '/Users/biocbuild/bbs-3.0-bioc/meat/Rgraphviz/src/libunix/share/man/man3'
/usr/bin/install -c -m 644 pathplan.3 '/Users/biocbuild/bbs-3.0-bioc/meat/Rgraphviz/src/libunix/share/man/man3'
../../config/install-sh -c -d '/Users/biocbuild/bbs-3.0-bioc/meat/Rgraphviz/src/libunix/share/graphviz/doc/pdf'
/usr/bin/install -c -m 644 pathplan.3.pdf '/Users/biocbuild/bbs-3.0-bioc/meat/Rgraphviz/src/libunix/share/graphviz/doc/pdf'
../../config/install-sh -c -d '/Users/biocbuild/bbs-3.0-bioc/meat/Rgraphviz/src/libunix/lib/pkgconfig'
/usr/bin/install -c -m 644 libpathplan.pc '/Users/biocbuild/bbs-3.0-bioc/meat/Rgraphviz/src/libunix/lib/pkgconfig'
../../config/install-sh -c -d '/Users/biocbuild/bbs-3.0-bioc/meat/Rgraphviz/src/libunix/include/graphviz'
/usr/bin/install -c -m 644 pathgeom.h pathplan.h '/Users/biocbuild/bbs-3.0-bioc/meat/Rgraphviz/src/libunix/include/graphviz'
Making install in vpsc
make[4]: Nothing to be done for `install-exec-am'.
make[4]: Nothing to be done for `install-data-am'.
Making install in rbtree
CC misc.lo
CC red_black_tree.lo
CC stack.lo
CCLD librbtree_C.la
make[4]: Nothing to be done for `install-exec-am'.
make[4]: Nothing to be done for `install-data-am'.
Making install in ortho
CC fPQ.lo
CC intset.lo
CC maze.lo
maze.c: In function 'mkMazeGraph':
maze.c:411: warning: value computed is not used
CC ortho.lo
CC partition.lo
CC rawgraph.lo
CC sgraph.lo
CC trapezoid.lo
CCLD libortho_C.la
make[4]: Nothing to be done for `install-exec-am'.
make[4]: Nothing to be done for `install-data-am'.
Making install in sparse
CC SparseMatrix.lo
SparseMatrix.c: In function 'SparseMatrix_multiply':
SparseMatrix.c:1291: warning: assuming signed overflow does not occur when assuming that (X + c) <= X is always false
SparseMatrix.c: In function 'SparseMatrix_multiply3':
SparseMatrix.c:1461: warning: assuming signed overflow does not occur when assuming that (X + c) <= X is always false
CC general.lo
CC BinaryHeap.lo
CC IntStack.lo
CCLD libsparse_C.la
make[4]: Nothing to be done for `install-exec-am'.
make[4]: Nothing to be done for `install-data-am'.
Making install in patchwork
CC patchwork.lo
CC patchworkinit.lo
CC tree_map.lo
CCLD libpatchwork_C.la
make[4]: Nothing to be done for `install-exec-am'.
make[4]: Nothing to be done for `install-data-am'.
Making install in common
CC arrows.lo
awk -f ../../awk/brewer.awk ../../lib/common/brewer_colors > brewer_lib
awk -f ../../awk/svgcolor.awk ../../lib/common/svgcolor_names > svgcolor_lib
cat brewer_lib svgcolor_lib ../../lib/common/color_names | LC_ALL=C sort > color_lib
awk -f ../../awk/colortbl.awk color_lib > colortbl.h
CC colxlate.lo
CC fontmetrics.lo
CC args.lo
CC memory.lo
CC globals.lo
CC htmllex.lo
CC htmlparse.lo
CC htmltable.lo
CC input.lo
CC pointset.lo
CC postproc.lo
CC routespl.lo
CC splines.lo
CC psusershape.lo
CC timing.lo
CC labels.lo
CC ns.lo
CC shapes.lo
CC utils.lo
CC geom.lo
CC output.lo
CC emit.lo
CCLD libcommon_C.la
make[4]: Nothing to be done for `install-exec-am'.
../../config/install-sh -c -d '/Users/biocbuild/bbs-3.0-bioc/meat/Rgraphviz/src/libunix/include/graphviz'
/usr/bin/install -c -m 644 arith.h geom.h color.h types.h textpara.h usershape.h '/Users/biocbuild/bbs-3.0-bioc/meat/Rgraphviz/src/libunix/include/graphviz'
Making install in pack
CC ccomps.lo
CC pack.lo
CCLD libpack_C.la
make[4]: Nothing to be done for `install-exec-am'.
../../config/install-sh -c -d '/Users/biocbuild/bbs-3.0-bioc/meat/Rgraphviz/src/libunix/share/man/man3'
/usr/bin/install -c -m 644 pack.3 '/Users/biocbuild/bbs-3.0-bioc/meat/Rgraphviz/src/libunix/share/man/man3'
../../config/install-sh -c -d '/Users/biocbuild/bbs-3.0-bioc/meat/Rgraphviz/src/libunix/share/graphviz/doc/pdf'
/usr/bin/install -c -m 644 pack.3.pdf '/Users/biocbuild/bbs-3.0-bioc/meat/Rgraphviz/src/libunix/share/graphviz/doc/pdf'
../../config/install-sh -c -d '/Users/biocbuild/bbs-3.0-bioc/meat/Rgraphviz/src/libunix/include/graphviz'
/usr/bin/install -c -m 644 pack.h '/Users/biocbuild/bbs-3.0-bioc/meat/Rgraphviz/src/libunix/include/graphviz'
Making install in xdot
CC xdot.lo
CCLD libxdot.la
CCLD libxdot_C.la
../../config/install-sh -c -d '/Users/biocbuild/bbs-3.0-bioc/meat/Rgraphviz/src/libunix/lib'
/bin/sh ../../libtool --mode=install /usr/bin/install -c libxdot.la '/Users/biocbuild/bbs-3.0-bioc/meat/Rgraphviz/src/libunix/lib'
libtool: install: /usr/bin/install -c .libs/libxdot.lai /Users/biocbuild/bbs-3.0-bioc/meat/Rgraphviz/src/libunix/lib/libxdot.la
libtool: install: /usr/bin/install -c .libs/libxdot.a /Users/biocbuild/bbs-3.0-bioc/meat/Rgraphviz/src/libunix/lib/libxdot.a
libtool: install: chmod 644 /Users/biocbuild/bbs-3.0-bioc/meat/Rgraphviz/src/libunix/lib/libxdot.a
libtool: install: ranlib /Users/biocbuild/bbs-3.0-bioc/meat/Rgraphviz/src/libunix/lib/libxdot.a
----------------------------------------------------------------------
Libraries have been installed in:
/Users/biocbuild/bbs-3.0-bioc/meat/Rgraphviz/src/libunix/lib
If you ever happen to want to link against installed libraries
in a given directory, LIBDIR, you must either use libtool, and
specify the full pathname of the library, or use the `-LLIBDIR'
flag during linking and do at least one of the following:
- add LIBDIR to the `DYLD_LIBRARY_PATH' environment variable
during execution
See any operating system documentation about shared libraries for
more information, such as the ld(1) and ld.so(8) manual pages.
----------------------------------------------------------------------
../../config/install-sh -c -d '/Users/biocbuild/bbs-3.0-bioc/meat/Rgraphviz/src/libunix/share/man/man3'
/usr/bin/install -c -m 644 xdot.3 '/Users/biocbuild/bbs-3.0-bioc/meat/Rgraphviz/src/libunix/share/man/man3'
../../config/install-sh -c -d '/Users/biocbuild/bbs-3.0-bioc/meat/Rgraphviz/src/libunix/share/graphviz/doc/pdf'
/usr/bin/install -c -m 644 xdot.3.pdf '/Users/biocbuild/bbs-3.0-bioc/meat/Rgraphviz/src/libunix/share/graphviz/doc/pdf'
../../config/install-sh -c -d '/Users/biocbuild/bbs-3.0-bioc/meat/Rgraphviz/src/libunix/lib/pkgconfig'
/usr/bin/install -c -m 644 libxdot.pc '/Users/biocbuild/bbs-3.0-bioc/meat/Rgraphviz/src/libunix/lib/pkgconfig'
../../config/install-sh -c -d '/Users/biocbuild/bbs-3.0-bioc/meat/Rgraphviz/src/libunix/include/graphviz'
/usr/bin/install -c -m 644 xdot.h '/Users/biocbuild/bbs-3.0-bioc/meat/Rgraphviz/src/libunix/include/graphviz'
Making install in gvc
CC gvrender.lo
CC gvlayout.lo
CC gvdevice.lo
CC gvloadimage.lo
CC gvcontext.lo
CC gvjobs.lo
CC gvevent.lo
CC gvplugin.lo
CC gvconfig.lo
CC gvtextlayout.lo
CC gvusershape.lo
CC gvc.lo
CCLD libgvc.la
CCLD libgvc_C.la
../../config/install-sh -c -d '/Users/biocbuild/bbs-3.0-bioc/meat/Rgraphviz/src/libunix/lib'
/bin/sh ../../libtool --mode=install /usr/bin/install -c libgvc.la '/Users/biocbuild/bbs-3.0-bioc/meat/Rgraphviz/src/libunix/lib'
libtool: install: /usr/bin/install -c .libs/libgvc.lai /Users/biocbuild/bbs-3.0-bioc/meat/Rgraphviz/src/libunix/lib/libgvc.la
libtool: install: /usr/bin/install -c .libs/libgvc.a /Users/biocbuild/bbs-3.0-bioc/meat/Rgraphviz/src/libunix/lib/libgvc.a
libtool: install: chmod 644 /Users/biocbuild/bbs-3.0-bioc/meat/Rgraphviz/src/libunix/lib/libgvc.a
libtool: install: ranlib /Users/biocbuild/bbs-3.0-bioc/meat/Rgraphviz/src/libunix/lib/libgvc.a
----------------------------------------------------------------------
Libraries have been installed in:
/Users/biocbuild/bbs-3.0-bioc/meat/Rgraphviz/src/libunix/lib
If you ever happen to want to link against installed libraries
in a given directory, LIBDIR, you must either use libtool, and
specify the full pathname of the library, or use the `-LLIBDIR'
flag during linking and do at least one of the following:
- add LIBDIR to the `DYLD_LIBRARY_PATH' environment variable
during execution
See any operating system documentation about shared libraries for
more information, such as the ld(1) and ld.so(8) manual pages.
----------------------------------------------------------------------
../../config/install-sh -c -d '/Users/biocbuild/bbs-3.0-bioc/meat/Rgraphviz/src/libunix/share/man/man3'
/usr/bin/install -c -m 644 gvc.3 '/Users/biocbuild/bbs-3.0-bioc/meat/Rgraphviz/src/libunix/share/man/man3'
../../config/install-sh -c -d '/Users/biocbuild/bbs-3.0-bioc/meat/Rgraphviz/src/libunix/share/graphviz/doc/pdf'
/usr/bin/install -c -m 644 gvc.3.pdf '/Users/biocbuild/bbs-3.0-bioc/meat/Rgraphviz/src/libunix/share/graphviz/doc/pdf'
../../config/install-sh -c -d '/Users/biocbuild/bbs-3.0-bioc/meat/Rgraphviz/src/libunix/lib/pkgconfig'
/usr/bin/install -c -m 644 libgvc.pc '/Users/biocbuild/bbs-3.0-bioc/meat/Rgraphviz/src/libunix/lib/pkgconfig'
../../config/install-sh -c -d '/Users/biocbuild/bbs-3.0-bioc/meat/Rgraphviz/src/libunix/include/graphviz'
/usr/bin/install -c -m 644 gvc.h gvcext.h gvplugin.h gvcjob.h gvcommon.h gvplugin_render.h gvplugin_layout.h gvconfig.h gvplugin_textlayout.h gvplugin_device.h gvplugin_loadimage.h '/Users/biocbuild/bbs-3.0-bioc/meat/Rgraphviz/src/libunix/include/graphviz'
Making install in circogen
CC circularinit.lo
CC nodelist.lo
CC block.lo
CC edgelist.lo
CC circular.lo
CC deglist.lo
CC blocktree.lo
CC blockpath.lo
CC circpos.lo
CC nodeset.lo
CCLD libcircogen_C.la
make[4]: Nothing to be done for `install-exec-am'.
make[4]: Nothing to be done for `install-data-am'.
Making install in dotgen
CC acyclic.lo
CC class1.lo
CC class2.lo
CC cluster.lo
CC compound.lo
CC conc.lo
CC decomp.lo
CC fastgr.lo
CC flat.lo
CC dotinit.lo
CC mincross.lo
CC position.lo
CC rank.lo
CC sameport.lo
CC dotsplines.lo
CC aspect.lo
CCLD libdotgen_C.la
make[4]: Nothing to be done for `install-exec-am'.
make[4]: Nothing to be done for `install-data-am'.
Making install in fdpgen
CC comp.lo
CC dbg.lo
CC grid.lo
CC fdpinit.lo
CC layout.lo
CC tlayout.lo
CC xlayout.lo
CC clusteredges.lo
CCLD libfdpgen_C.la
/usr/bin/ranlib: file: .libs/libfdpgen_C.a(dbg.o) has no symbols
ranlib: file: .libs/libfdpgen_C.a(dbg.o) has no symbols
make[4]: Nothing to be done for `install-exec-am'.
make[4]: Nothing to be done for `install-data-am'.
Making install in neatogen
CC adjust.lo
CC circuit.lo
CC edges.lo
CC geometry.lo
CC heap.lo
CC hedges.lo
CC info.lo
CC neatoinit.lo
CC legal.lo
CC lu.lo
CC matinv.lo
CC memory.lo
CC poly.lo
CC printvis.lo
CC site.lo
CC solve.lo
CC neatosplines.lo
neatosplines.c: In function '_spline_edges':
neatosplines.c:603: warning: unused variable 'rtr'
CC stuff.lo
CC voronoi.lo
CC stress.lo
CC kkutils.lo
CC matrix_ops.lo
CC embed_graph.lo
CC dijkstra.lo
CC conjgrad.lo
CC pca.lo
CC closest.lo
CC bfs.lo
CC constraint.lo
CC quad_prog_solve.lo
CC smart_ini_x.lo
CC constrained_majorization.lo
CC opt_arrangement.lo
CC overlap.lo
CC call_tri.lo
CC compute_hierarchy.lo
CC delaunay.lo
CC multispline.lo
CCLD libneatogen_C.la
make[4]: Nothing to be done for `install-exec-am'.
make[4]: Nothing to be done for `install-data-am'.
Making install in twopigen
CC twopiinit.lo
CC circle.lo
CCLD libtwopigen_C.la
make[4]: Nothing to be done for `install-exec-am'.
make[4]: Nothing to be done for `install-data-am'.
Making install in sfdpgen
CC sfdpinit.lo
CC spring_electrical.lo
CC LinkedList.lo
CC sparse_solve.lo
CC post_process.lo
CC stress_model.lo
CC uniform_stress.lo
CC QuadTree.lo
CC Multilevel.lo
CC PriorityQueue.lo
CCLD libsfdpgen_C.la
make[4]: Nothing to be done for `install-exec-am'.
make[4]: Nothing to be done for `install-data-am'.
Making install in osage
CC osageinit.lo
CCLD libosage_C.la
make[4]: Nothing to be done for `install-exec-am'.
make[4]: Nothing to be done for `install-data-am'.
make[4]: Nothing to be done for `install-exec-am'.
make[4]: Nothing to be done for `install-data-am'.
Making install in plugin
Making install in core
CC gvplugin_core.lo
CC gvrender_core_dot.lo
CC gvrender_core_fig.lo
CC gvrender_core_map.lo
CC gvrender_core_ps.lo
CC gvrender_core_svg.lo
CC gvrender_core_tk.lo
CC gvrender_core_vml.lo
CC gvloadimage_core.lo
CCLD libgvplugin_core_C.la
CCLD libgvplugin_core.la
../../config/install-sh -c -d '/Users/biocbuild/bbs-3.0-bioc/meat/Rgraphviz/src/libunix/lib/graphviz'
/bin/sh ../../libtool --mode=install /usr/bin/install -c libgvplugin_core.la '/Users/biocbuild/bbs-3.0-bioc/meat/Rgraphviz/src/libunix/lib/graphviz'
libtool: install: /usr/bin/install -c .libs/libgvplugin_core.lai /Users/biocbuild/bbs-3.0-bioc/meat/Rgraphviz/src/libunix/lib/graphviz/libgvplugin_core.la
libtool: install: /usr/bin/install -c .libs/libgvplugin_core.a /Users/biocbuild/bbs-3.0-bioc/meat/Rgraphviz/src/libunix/lib/graphviz/libgvplugin_core.a
libtool: install: chmod 644 /Users/biocbuild/bbs-3.0-bioc/meat/Rgraphviz/src/libunix/lib/graphviz/libgvplugin_core.a
libtool: install: ranlib /Users/biocbuild/bbs-3.0-bioc/meat/Rgraphviz/src/libunix/lib/graphviz/libgvplugin_core.a
----------------------------------------------------------------------
Libraries have been installed in:
/Users/biocbuild/bbs-3.0-bioc/meat/Rgraphviz/src/libunix/lib/graphviz
If you ever happen to want to link against installed libraries
in a given directory, LIBDIR, you must either use libtool, and
specify the full pathname of the library, or use the `-LLIBDIR'
flag during linking and do at least one of the following:
- add LIBDIR to the `DYLD_LIBRARY_PATH' environment variable
during execution
See any operating system documentation about shared libraries for
more information, such as the ld(1) and ld.so(8) manual pages.
----------------------------------------------------------------------
make[4]: Nothing to be done for `install-data-am'.
Making install in dot_layout
CC gvplugin_dot_layout.lo
CC gvlayout_dot_layout.lo
gvlayout_dot_layout.c:45: warning: ignoring #pragma comment
gvlayout_dot_layout.c:46: warning: ignoring #pragma comment
CCLD libgvplugin_dot_layout_C.la
CCLD libgvplugin_dot_layout.la
../../config/install-sh -c -d '/Users/biocbuild/bbs-3.0-bioc/meat/Rgraphviz/src/libunix/lib/graphviz'
/bin/sh ../../libtool --mode=install /usr/bin/install -c libgvplugin_dot_layout.la '/Users/biocbuild/bbs-3.0-bioc/meat/Rgraphviz/src/libunix/lib/graphviz'
libtool: install: /usr/bin/install -c .libs/libgvplugin_dot_layout.lai /Users/biocbuild/bbs-3.0-bioc/meat/Rgraphviz/src/libunix/lib/graphviz/libgvplugin_dot_layout.la
libtool: install: /usr/bin/install -c .libs/libgvplugin_dot_layout.a /Users/biocbuild/bbs-3.0-bioc/meat/Rgraphviz/src/libunix/lib/graphviz/libgvplugin_dot_layout.a
libtool: install: chmod 644 /Users/biocbuild/bbs-3.0-bioc/meat/Rgraphviz/src/libunix/lib/graphviz/libgvplugin_dot_layout.a
libtool: install: ranlib /Users/biocbuild/bbs-3.0-bioc/meat/Rgraphviz/src/libunix/lib/graphviz/libgvplugin_dot_layout.a
----------------------------------------------------------------------
Libraries have been installed in:
/Users/biocbuild/bbs-3.0-bioc/meat/Rgraphviz/src/libunix/lib/graphviz
If you ever happen to want to link against installed libraries
in a given directory, LIBDIR, you must either use libtool, and
specify the full pathname of the library, or use the `-LLIBDIR'
flag during linking and do at least one of the following:
- add LIBDIR to the `DYLD_LIBRARY_PATH' environment variable
during execution
See any operating system documentation about shared libraries for
more information, such as the ld(1) and ld.so(8) manual pages.
----------------------------------------------------------------------
make[4]: Nothing to be done for `install-data-am'.
Making install in neato_layout
CC gvplugin_neato_layout.lo
CC gvlayout_neato_layout.lo
CCLD libgvplugin_neato_layout_C.la
/usr/bin/ranlib: file: .libs/libgvplugin_neato_layout_C.a(dbg.o) has no symbols
ranlib: file: .libs/libgvplugin_neato_layout_C.a(dbg.o) has no symbols
CCLD libgvplugin_neato_layout.la
/usr/bin/ranlib: file: .libs/libgvplugin_neato_layout.a(dbg.o) has no symbols
ranlib: file: .libs/libgvplugin_neato_layout.a(dbg.o) has no symbols
../../config/install-sh -c -d '/Users/biocbuild/bbs-3.0-bioc/meat/Rgraphviz/src/libunix/lib/graphviz'
/bin/sh ../../libtool --mode=install /usr/bin/install -c libgvplugin_neato_layout.la '/Users/biocbuild/bbs-3.0-bioc/meat/Rgraphviz/src/libunix/lib/graphviz'
libtool: install: /usr/bin/install -c .libs/libgvplugin_neato_layout.lai /Users/biocbuild/bbs-3.0-bioc/meat/Rgraphviz/src/libunix/lib/graphviz/libgvplugin_neato_layout.la
libtool: install: /usr/bin/install -c .libs/libgvplugin_neato_layout.a /Users/biocbuild/bbs-3.0-bioc/meat/Rgraphviz/src/libunix/lib/graphviz/libgvplugin_neato_layout.a
libtool: install: chmod 644 /Users/biocbuild/bbs-3.0-bioc/meat/Rgraphviz/src/libunix/lib/graphviz/libgvplugin_neato_layout.a
libtool: install: ranlib /Users/biocbuild/bbs-3.0-bioc/meat/Rgraphviz/src/libunix/lib/graphviz/libgvplugin_neato_layout.a
ranlib: file: /Users/biocbuild/bbs-3.0-bioc/meat/Rgraphviz/src/libunix/lib/graphviz/libgvplugin_neato_layout.a(dbg.o) has no symbols
----------------------------------------------------------------------
Libraries have been installed in:
/Users/biocbuild/bbs-3.0-bioc/meat/Rgraphviz/src/libunix/lib/graphviz
If you ever happen to want to link against installed libraries
in a given directory, LIBDIR, you must either use libtool, and
specify the full pathname of the library, or use the `-LLIBDIR'
flag during linking and do at least one of the following:
- add LIBDIR to the `DYLD_LIBRARY_PATH' environment variable
during execution
See any operating system documentation about shared libraries for
more information, such as the ld(1) and ld.so(8) manual pages.
----------------------------------------------------------------------
make[4]: Nothing to be done for `install-data-am'.
make[4]: Nothing to be done for `install-exec-am'.
make[4]: Nothing to be done for `install-data-am'.
make[3]: Nothing to be done for `install-exec-am'.
config/install-sh -c -d '/Users/biocbuild/bbs-3.0-bioc/meat/Rgraphviz/src/libunix/share/man/man7'
/usr/bin/install -c -m 644 graphviz.7 '/Users/biocbuild/bbs-3.0-bioc/meat/Rgraphviz/src/libunix/share/man/man7'
config/install-sh -c -d '/Users/biocbuild/bbs-3.0-bioc/meat/Rgraphviz/src/libunix/include/graphviz'
/usr/bin/install -c -m 644 graphviz_version.h '/Users/biocbuild/bbs-3.0-bioc/meat/Rgraphviz/src/libunix/include/graphviz'
config/install-sh -c -d '/Users/biocbuild/bbs-3.0-bioc/meat/Rgraphviz/src/libunix/share/graphviz/doc'
/usr/bin/install -c -m 644 AUTHORS COPYING ChangeLog NEWS cpl1.0.txt '/Users/biocbuild/bbs-3.0-bioc/meat/Rgraphviz/src/libunix/share/graphviz/doc'
cp: /Users/biocbuild/bbs-3.0-bioc/meat/Rgraphviz/src/libunix/lib/graphviz is a directory (not copied).
cp: /Users/biocbuild/bbs-3.0-bioc/meat/Rgraphviz/src/libunix/lib/pkgconfig is a directory (not copied).
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for ANSI C header files... rm: conftest.dSYM: is a directory
rm: conftest.dSYM: is a directory
yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking zlib.h usability... yes
checking zlib.h presence... yes
checking for zlib.h... yes
checking for deflateBound in -lz... yes
checking for stdbool.h that conforms to C99... yes
checking for _Bool... yes
checking for whether compiler has bool... yes
configure: Using the following compilation and linking flags for Rgraphviz
configure: PKG_CFLAGS= -I/Users/biocbuild/bbs-3.0-bioc/meat/Rgraphviz/src/libunix/include/graphviz
configure: PKG_LIBS=libxdot.a libgvplugin_dot_layout.a libgvplugin_neato_layout.a libgvplugin_core.a libgvc.a libpathplan.a libgraph.a libcdt.a -lz
configure: GVIZ_DEFS=-DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=28 -DGRAPHVIZ_STATIC -DHAVE_STDBOOL_H=1 -DHAVE_BOOL=1
configure: Compiling using Graphviz version: '2.28.0'.
configure: Using bundled Graphviz: 'TRUE'.
configure: creating ./config.status
config.status: creating R/graphviz_build_version.R
config.status: creating src/Makevars
** libs
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -I/Users/biocbuild/bbs-3.0-bioc/meat/Rgraphviz/src/libunix/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=28 -DGRAPHVIZ_STATIC -DHAVE_STDBOOL_H=1 -DHAVE_BOOL=1 -fPIC -mtune=core2 -g -O2 -Wall -c LL_funcs.c -o LL_funcs.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -I/Users/biocbuild/bbs-3.0-bioc/meat/Rgraphviz/src/libunix/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=28 -DGRAPHVIZ_STATIC -DHAVE_STDBOOL_H=1 -DHAVE_BOOL=1 -fPIC -mtune=core2 -g -O2 -Wall -c Rgraphviz.c -o Rgraphviz.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -I/Users/biocbuild/bbs-3.0-bioc/meat/Rgraphviz/src/libunix/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=28 -DGRAPHVIZ_STATIC -DHAVE_STDBOOL_H=1 -DHAVE_BOOL=1 -fPIC -mtune=core2 -g -O2 -Wall -c RgraphvizInit.c -o RgraphvizInit.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -I/Users/biocbuild/bbs-3.0-bioc/meat/Rgraphviz/src/libunix/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=28 -DGRAPHVIZ_STATIC -DHAVE_STDBOOL_H=1 -DHAVE_BOOL=1 -fPIC -mtune=core2 -g -O2 -Wall -c agopen.c -o agopen.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -I/Users/biocbuild/bbs-3.0-bioc/meat/Rgraphviz/src/libunix/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=28 -DGRAPHVIZ_STATIC -DHAVE_STDBOOL_H=1 -DHAVE_BOOL=1 -fPIC -mtune=core2 -g -O2 -Wall -c agread.c -o agread.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -I/Users/biocbuild/bbs-3.0-bioc/meat/Rgraphviz/src/libunix/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=28 -DGRAPHVIZ_STATIC -DHAVE_STDBOOL_H=1 -DHAVE_BOOL=1 -fPIC -mtune=core2 -g -O2 -Wall -c agwrite.c -o agwrite.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -I/Users/biocbuild/bbs-3.0-bioc/meat/Rgraphviz/src/libunix/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=28 -DGRAPHVIZ_STATIC -DHAVE_STDBOOL_H=1 -DHAVE_BOOL=1 -fPIC -mtune=core2 -g -O2 -Wall -c bezier.c -o bezier.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -I/Users/biocbuild/bbs-3.0-bioc/meat/Rgraphviz/src/libunix/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=28 -DGRAPHVIZ_STATIC -DHAVE_STDBOOL_H=1 -DHAVE_BOOL=1 -fPIC -mtune=core2 -g -O2 -Wall -c buildEdgeList.c -o buildEdgeList.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -I/Users/biocbuild/bbs-3.0-bioc/meat/Rgraphviz/src/libunix/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=28 -DGRAPHVIZ_STATIC -DHAVE_STDBOOL_H=1 -DHAVE_BOOL=1 -fPIC -mtune=core2 -g -O2 -Wall -c buildNodeList.c -o buildNodeList.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -I/Users/biocbuild/bbs-3.0-bioc/meat/Rgraphviz/src/libunix/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=28 -DGRAPHVIZ_STATIC -DHAVE_STDBOOL_H=1 -DHAVE_BOOL=1 -fPIC -mtune=core2 -g -O2 -Wall -c doLayout.c -o doLayout.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -I/Users/biocbuild/bbs-3.0-bioc/meat/Rgraphviz/src/libunix/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=28 -DGRAPHVIZ_STATIC -DHAVE_STDBOOL_H=1 -DHAVE_BOOL=1 -fPIC -mtune=core2 -g -O2 -Wall -c graphvizVersion.c -o graphvizVersion.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -I/Users/biocbuild/bbs-3.0-bioc/meat/Rgraphviz/src/libunix/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=28 -DGRAPHVIZ_STATIC -DHAVE_STDBOOL_H=1 -DHAVE_BOOL=1 -fPIC -mtune=core2 -g -O2 -Wall -c init.c -o init.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -L/usr/local/lib -o Rgraphviz.so LL_funcs.o Rgraphviz.o RgraphvizInit.o agopen.o agread.o agwrite.o bezier.o buildEdgeList.o buildNodeList.o doLayout.o graphvizVersion.o init.o libxdot.a libgvplugin_dot_layout.a libgvplugin_neato_layout.a libgvplugin_core.a libgvc.a libpathplan.a libgraph.a libcdt.a -lz -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Library/Frameworks/R.framework/Versions/3.1/Resources/library/Rgraphviz/libs
** R
** inst
** preparing package for lazy loading
Creating a generic function for ‘head’ from package ‘utils’ in package ‘Rgraphviz’
Creating a generic function for ‘tail’ from package ‘utils’ in package ‘Rgraphviz’
Creating a generic function for ‘lines’ from package ‘graphics’ in package ‘Rgraphviz’
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (Rgraphviz)