PICS 2.10.0
Renan Sauteraud
| Snapshot Date: 2015-04-09 16:20:12 -0700 (Thu, 09 Apr 2015) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_0/madman/Rpacks/PICS | | Last Changed Rev: 95439 / Revision: 102249 | | Last Changed Date: 2014-10-13 14:38:33 -0700 (Mon, 13 Oct 2014) |
| zin1 | Linux (Ubuntu 12.04.4 LTS) / x86_64 | OK | OK | OK | |
| moscato1 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | OK | OK | OK |
| perceval | Mac OS X Snow Leopard (10.6.8) / x86_64 | OK | OK | OK | [ OK ] |
| oaxaca | Mac OS X Mavericks (10.9.5) / x86_64 | OK | OK | OK | OK |
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### Running command:
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### rm -rf PICS.buildbin-libdir && mkdir PICS.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh PICS_2.10.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R PICS.buildbin-libdir
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>>>>>>>
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=PICS.buildbin-libdir PICS_2.10.0.tar.gz'
>>>>>>>
* installing *source* package ‘PICS’ ...
checking for pkg-config... /usr/bin/pkg-config
checking pkg-config is at least version 0.9.0... yes
checking for GSL... yes
configure: creating ./config.status
config.status: creating src/Makevars
** libs
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=core2 -g -O2 -Wall -c pics.c -o pics.o
pics.c: In function ‘iterEM’:
pics.c:581: warning: unused variable ‘mu’
pics.c: In function ‘ECM1’:
pics.c:803: warning: suggest parentheses around comparison in operand of &
pics.c:963: warning: suggest parentheses around comparison in operand of &
pics.c:651: warning: unused variable ‘k’
pics.c: In function ‘ECM2’:
pics.c:1009: warning: unused variable ‘ee’
pics.c:1009: warning: unused variable ‘ggR’
pics.c:1009: warning: unused variable ‘ggF’
pics.c:1009: warning: unused variable ‘aaR’
pics.c:1009: warning: unused variable ‘aaF’
pics.c:1009: warning: unused variable ‘etaDiff’
pics.c:1000: warning: unused variable ‘k’
pics.c: In function ‘BIC’:
pics.c:1272: warning: unused variable ‘k’
pics.c: In function ‘getInfMat’:
pics.c:1633: warning: unused variable ‘PhiRw’
pics.c:1633: warning: unused variable ‘PhiFw’
pics.c: In function ‘mergePeak’:
pics.c:1889: warning: unused variable ‘j’
pics.c:1889: warning: unused variable ‘i’
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=core2 -g -O2 -Wall -c segment.c -o segment.o
segment.c: In function ‘segReads’:
segment.c:123: warning: suggest parentheses around comparison in operand of &
segment.c:114: warning: unused variable ‘count’
segment.c: In function ‘callRegions’:
segment.c:308: warning: unused variable ‘i’
segment.c: In function ‘getSegL’:
segment.c:1364: warning: unused variable ‘j’
segment.c: In function ‘getDensity’:
segment.c:1543: warning: suggest parentheses around comparison in operand of &
segment.c:1544: warning: suggest parentheses around comparison in operand of &
segment.c:1545: warning: suggest parentheses around comparison in operand of &
segment.c:1546: warning: suggest parentheses around comparison in operand of &
segment.c:1547: warning: suggest parentheses around comparison in operand of &
segment.c:1548: warning: suggest parentheses around comparison in operand of &
segment.c:1549: warning: suggest parentheses around comparison in operand of &
segment.c:1490: warning: unused variable ‘filter1’
segment.c:1489: warning: unused variable ‘muFilter’
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -L/usr/local/lib -o PICS.so pics.o segment.o -L/usr/local/lib -lgsl -lgslcblas -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.0-bioc/meat/PICS.buildbin-libdir/PICS/libs
** R
** inst
** preparing package for lazy loading
No methods found in "IRanges" for requests: levels, as.factor, elementMetadata, elementMetadata<-
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
No methods found in "IRanges" for requests: levels, as.factor, elementMetadata, elementMetadata<-
* DONE (PICS)
>>>>>>>
>>>>>>> FIXING LINKS FOR PICS.buildbin-libdir/PICS/libs//PICS.so
>>>>>>>
install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.1/Resources/lib/libgcc_s.1.dylib" "PICS.buildbin-libdir/PICS/libs//PICS.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/3.1/Resources/lib/libgfortran.2.dylib" "PICS.buildbin-libdir/PICS/libs//PICS.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.1/Resources/lib/libreadline.5.2.dylib" "PICS.buildbin-libdir/PICS/libs//PICS.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.1/Resources/lib/libreadline.dylib" "PICS.buildbin-libdir/PICS/libs//PICS.so"