Back to the "Multiple platform build/check report" A  B  C  D  E  F  G  H  I  J  K  L  M  N [O] P  Q  R  S  T  U  V  W  X  Y  Z 

BioC 3.0: BUILD report for OncoSimulR on perceval

This page was generated on 2014-09-12 10:39:06 -0700 (Fri, 12 Sep 2014).

Package 588/881HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
OncoSimulR 0.99.2
Ramon Diaz-Uriarte
Snapshot Date: 2014-09-11 16:41:03 -0700 (Thu, 11 Sep 2014)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/OncoSimulR
Last Changed Rev: 92963 / Revision: 94052
Last Changed Date: 2014-07-28 15:43:51 -0700 (Mon, 28 Jul 2014)
zin1 Linux (Ubuntu 12.04.4 LTS) / x86_64  NotNeeded  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  NotNeeded  OK  OK  OK 
perceval Mac OS X Snow Leopard (10.6.8) / x86_64  NotNeeded [ ERROR ] skipped  skipped 
oaxaca Mac OS X Mavericks (10.9.4) / x86_64  NotNeeded  OK  OK  OK 

Summary

Package: OncoSimulR
Version: 0.99.2
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data OncoSimulR
StartedAt: 2014-09-11 20:51:39 -0700 (Thu, 11 Sep 2014)
EndedAt: 2014-09-11 20:51:40 -0700 (Thu, 11 Sep 2014)
EllapsedTime: 1.5 seconds
RetCode: 1
Status:  ERROR 
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data OncoSimulR
###
##############################################################################
##############################################################################


* checking for file ‘OncoSimulR/DESCRIPTION’ ... OK
* preparing ‘OncoSimulR’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
      -----------------------------------
* installing *source* package ‘OncoSimulR’ ...
** libs
I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.1/Resources/library/Rcpp/include"      -c OncoSimul.cpp -o OncoSimul.o
/bin/sh: I/Library/Frameworks/R.framework/Resources/include: No such file or directory
make: [OncoSimul.o] Error 127 (ignored)
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.1/Resources/library/Rcpp/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c OncoSimulR_init.c -o OncoSimulR_init.o
-dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -L/usr/local/lib -o OncoSimulR.so OncoSimul.o OncoSimulR_init.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
/bin/sh: -dynamiclib: command not found
make: *** [OncoSimulR.so] Error 127
ERROR: compilation failed for package ‘OncoSimulR’
* removing ‘/private/tmp/RtmpJEdB68/Rinstb8c48267d41/OncoSimulR’
      -----------------------------------
ERROR: package installation failed