IsoGeneGUI 2.0.0
Setia Pramana
| Snapshot Date: 2015-04-09 16:20:12 -0700 (Thu, 09 Apr 2015) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_0/madman/Rpacks/IsoGeneGUI | | Last Changed Rev: 95439 / Revision: 102249 | | Last Changed Date: 2014-10-13 14:38:33 -0700 (Mon, 13 Oct 2014) |
| zin1 | Linux (Ubuntu 12.04.4 LTS) / x86_64 | NotNeeded | OK | [ OK ] | |
| moscato1 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | NotNeeded | OK | OK | OK |
| perceval | Mac OS X Snow Leopard (10.6.8) / x86_64 | NotNeeded | OK | OK | OK |
| oaxaca | Mac OS X Mavericks (10.9.5) / x86_64 | NotNeeded | OK | OK | OK |
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### Running command:
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### /home/biocbuild/bbs-3.0-bioc/R/bin/R CMD check --no-vignettes --timings IsoGeneGUI_2.0.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.0-bioc/meat/IsoGeneGUI.Rcheck’
* using R version 3.1.3 (2015-03-09)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘IsoGeneGUI/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘IsoGeneGUI’ version ‘2.0.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘IsoGeneGUI’ can be installed ... [19s/20s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... NOTE
'library' or 'require' call to ‘RUnit’ in package code.
Please use :: or requireNamespace() instead.
See section 'Suggested packages' in the 'Writing R Extensions' manual.
Package in Depends field not imported from: ‘tcltk’
These packages need to be imported from (in the NAMESPACE file)
for when this namespace is loaded but not attached.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
.test: no visible global function definition for ‘defineTestSuite’
.test: no visible global function definition for ‘runTestSuite’
.test: no visible global function definition for ‘printTextProtocol’
CalcStat: no visible binding for '<<-' assignment to ‘Direction’
CalcStat: no visible binding for global variable ‘StatVal’
CalcStat: no visible binding for global variable ‘Direction’
CalcStat: no visible binding for '<<-' assignment to ‘E2Val’
CalcStat: no visible binding for '<<-' assignment to ‘MVal’
CalcStat: no visible binding for '<<-' assignment to ‘WilliamsVal’
CalcStat: no visible binding for '<<-' assignment to ‘MarcusVal’
CalcStat: no visible binding for '<<-' assignment to ‘ModMVal’
ChooseStat: no visible global function definition for ‘tktoplevel’
ChooseStat: no visible global function definition for ‘tkwm.title’
ChooseStat: no visible global function definition for ‘tkwm.deiconify’
ChooseStat: no visible global function definition for ‘tkgrab.set’
ChooseStat: no visible global function definition for ‘tkfocus’
ChooseStat: no visible global function definition for ‘tkframe’
ChooseStat: no visible global function definition for ‘tkradiobutton’
ChooseStat: no visible global function definition for ‘tclVar’
ChooseStat: no visible global function definition for ‘tkconfigure’
ChooseStat: no visible global function definition for ‘tkgrid’
ChooseStat: no visible global function definition for ‘tklabel’
ChooseStat : on.Ok: no visible global function definition for
‘tclvalue’
ChooseStat : on.Ok: no visible binding for '<<-' assignment to
‘statUsed’
ChooseStat : on.Ok: no visible global function definition for
‘tkdestroy’
ChooseStat : on.Cancel: no visible global function definition for
‘tkdestroy’
ChooseStat : on.Cancel: no visible binding for '<<-' assignment to
‘statUsed’
ChooseStat: no visible global function definition for ‘tkbutton’
ChooseStat: no visible global function definition for
‘tkgrid.configure’
ChooseStat: no visible global function definition for ‘tkwait.window’
ExactE2: no visible global function definition for ‘tkmessageBox’
ExactE2: no visible global function definition for ‘tclvalue’
ExactE2: no visible global function definition for ‘tkfocus’
ExactE2: no visible binding for global variable ‘tt’
ExactE2: no visible global function definition for ‘tktoplevel’
ExactE2: no visible global function definition for ‘tkwm.title’
ExactE2: no visible global function definition for ‘tkframe’
ExactE2: no visible global function definition for ‘tkradiobutton’
ExactE2: no visible global function definition for ‘tclVar’
ExactE2: no visible global function definition for ‘tkconfigure’
ExactE2: no visible global function definition for ‘tkentry’
ExactE2 : Calc.Asymp: no visible global function definition for
‘tkmessageBox’
ExactE2 : Calc.Asymp: no visible global function definition for
‘tclvalue’
ExactE2 : Calc.Asymp: no visible global function definition for
‘tkfocus’
ExactE2 : Calc.Asymp: no visible global function definition for
‘tkconfigure’
ExactE2 : Calc.Asymp: no visible binding for '<<-' assignment to
‘exprs2Asymp’
ExactE2 : Calc.Asymp: no visible binding for global variable ‘exprs’
ExactE2 : Calc.Asymp: no visible binding for global variable
‘exprs2Asymp’
ExactE2 : Calc.Asymp: no visible binding for '<<-' assignment to
‘res.Asymp’
ExactE2 : Calc.Asymp: no visible binding for global variable ‘dose’
ExactE2 : Calc.Asymp: no visible binding for '<<-' assignment to
‘pval.Asymp’
ExactE2 : Calc.Asymp: no visible binding for global variable
‘res.Asymp’
ExactE2 : Calc.Asymp: no visible binding for '<<-' assignment to
‘ProbeID’
ExactE2 : Calc.Asymp: no visible binding for '<<-' assignment to
‘Mu.Diff.Asymp’
ExactE2 : Calc.Asymp: no visible binding for '<<-' assignment to
‘E2Val.Asymp’
ExactE2 : Calc.Asymp: no visible binding for global variable ‘ProbeID’
ExactE2 : Calc.Asymp: no visible global function definition for
‘tkdelete’
ExactE2 : Calc.Asymp: no visible binding for global variable
‘treeWidget’
ExactE2 : Calc.Asymp: no visible global function definition for
‘tkinsert’
ExactE2: no visible global function definition for ‘tkbutton’
ExactE2: no visible global function definition for ‘tklabel’
ExactE2: no visible global function definition for ‘tkgrid.configure’
ExactE2: no visible global function definition for ‘tkgrid’
ExactE2: no visible global function definition for ‘tkcheckbutton’
ExactE2 : AdjustBut: no visible global function definition for
‘tkmessageBox’
ExactE2 : AdjustBut: no visible global function definition for
‘tclvalue’
ExactE2 : AdjustBut: no visible global function definition for
‘tkfocus’
ExactE2 : AdjustBut: no visible global function definition for
‘tkconfigure’
ExactE2 : AdjustBut: no visible binding for global variable
‘E2Val.Asymp’
ExactE2 : AdjustBut: no visible binding for '<<-' assignment to
‘FDRval’
ExactE2 : AdjustBut: no visible binding for global variable ‘res.Asymp’
ExactE2 : AdjustBut: no visible global function definition for
‘tkdelete’
ExactE2 : AdjustBut: no visible binding for global variable
‘treeWidget’
ExactE2 : AdjustBut: no visible global function definition for
‘tkinsert’
ExactE2 : AdjustBut: no visible binding for global variable ‘FDRval’
ExactE2 : AdjustBut: no visible binding for global variable
‘pval.Asymp’
ExactE2 : AdjustBut: no visible binding for global variable
‘exprs2Asymp’
ExactE2 : AdjustBut: no visible binding for global variable
‘Mu.Diff.Asymp’
ExactE2 : AdjustBut: no visible binding for '<<-' assignment to
‘Res.Asymtot’
ExactE2 : AdjustBut: no visible binding for global variable ‘ProbeID’
ExactE2 : AdjustBut: no visible binding for global variable
‘Res.Asymtot’
ExactE2 : AdjustBut: no visible binding for '<<-' assignment to
‘SigGenes.AsymptotE2’
ExactE2 : savesiggene: no visible binding for global variable
‘SigGenes.AsymptotE2’
ExactE2 : saveallgene: no visible binding for '<<-' assignment to
‘Pval.AllGenes.Asymp’
ExactE2 : saveallgene: no visible binding for global variable
‘Res.Asymtot’
ExactE2 : PlotBut: no visible global function definition for
‘tkmessageBox’
ExactE2 : PlotBut: no visible global function definition for ‘tclvalue’
ExactE2 : PlotBut: no visible global function definition for ‘tkfocus’
ExactE2 : PlotBut: no visible global function definition for
‘tkconfigure’
ExactE2 : PlotBut : rankPlot: no visible binding for global variable
‘res.Asymp’
ExactE2 : PlotBut : rankPlot: no visible binding for global variable
‘pval.Asymp’
ExactE2 : PlotBut : rankPlot: no visible binding for global variable
‘exprs2Asymp’
ExactE2 : PlotBut : rankPlot: no visible binding for global variable
‘adjpBH’
ExactE2 : PlotBut : rankPlot: no visible binding for global variable
‘adjpBY’
ExactE2 : PlotBut : rankPlot: no visible binding for global variable
‘adjpSS’
ExactE2 : PlotBut : rankPlot: no visible binding for global variable
‘adjpSD’
ExactE2 : PlotBut : rankPlot: no visible binding for global variable
‘adjpHolm’
ExactE2 : PlotBut : rankPlot: no visible binding for global variable
‘adjpHoch’
ExactE2 : PlotBut : rankPlot: no visible binding for global variable
‘adjpBon’
ExactE2 : PlotBut : rankPlot: no visible binding for global variable
‘FDRval’
ExactE2 : PlotBut : rankPlot: no visible binding for global variable
‘result3’
ExactE2 : PlotBut : E2vsDiffPlot: no visible binding for global
variable ‘Mu.Diff.Asymp’
ExactE2 : PlotBut : E2vsDiffPlot: no visible binding for global
variable ‘res.Asymp’
ExactE2 : onExit: no visible global function definition for ‘tkdestroy’
IsoGeneGUI: no visible binding for '<<-' assignment to ‘tt’
IsoGeneGUI: no visible global function definition for ‘tktoplevel’
IsoGeneGUI: no visible global function definition for ‘tkwm.title’
IsoGeneGUI: no visible binding for global variable ‘tt’
IsoGeneGUI: no visible global function definition for ‘tkmenu’
IsoGeneGUI: no visible global function definition for ‘tkconfigure’
IsoGeneGUI: no visible global function definition for ‘tkframe’
IsoGeneGUI: no visible global function definition for ‘tclRequire’
IsoGeneGUI: no visible global function definition for ‘tkadd’
IsoGeneGUI: no visible global function definition for ‘tkfont.create’
IsoGeneGUI: no visible global function definition for ‘tkgrid’
IsoGeneGUI: no visible global function definition for ‘tklabel’
IsoGeneGUI: no visible binding for '<<-' assignment to ‘SeedNum’
IsoGeneGUI: no visible global function definition for ‘tkscrollbar’
IsoGeneGUI : <anonymous>: no visible global function definition for
‘tkyview’
IsoGeneGUI : <anonymous>: no visible binding for global variable
‘treeWidget’
IsoGeneGUI: no visible binding for '<<-' assignment to ‘treeWidget’
IsoGeneGUI: no visible global function definition for ‘tkwidget’
IsoGeneGUI : <anonymous>: no visible global function definition for
‘tkset’
IsoGeneGUI: no visible binding for global variable ‘treeWidget’
IsoGeneGUI: no visible global function definition for
‘tkgrid.configure’
IsoGeneGUI: no visible global function definition for ‘tkinsert’
IsoGeneGUI: no visible global function definition for ‘tkwait.window’
IsoGeneGUIHelp: no visible global function definition for
‘tkgrab.release’
IsoGeneGUIVignette: no visible global function definition for
‘tkgrab.release’
IsoPlotSldr: no visible global function definition for ‘tkmessageBox’
IsoPlotSldr: no visible binding for '<<-' assignment to ‘statSAMplot’
IsoPlotSldr: no visible binding for global variable ‘statUsed’
IsoPlotSldr: no visible binding for '<<-' assignment to ‘pos’
IsoPlotSldr: no visible global function definition for ‘tktoplevel’
IsoPlotSldr: no visible global function definition for ‘tkwm.title’
IsoPlotSldr: no visible global function definition for ‘tkwm.geometry’
IsoPlotSldr: no visible global function definition for ‘tkframe’
IsoPlotSldr: no visible binding for '<<-' assignment to ‘AllFDR’
IsoPlotSldr: no visible binding for global variable ‘SAMRes’
IsoPlotSldr: no visible binding for global variable ‘statSAMplot’
IsoPlotSldr: no visible binding for '<<-' assignment to ‘Delta.table’
IsoPlotSldr: no visible binding for global variable ‘AllFDR’
IsoPlotSldr: no visible binding for global variable ‘Delta.table’
IsoPlotSldr: no visible binding for '<<-' assignment to ‘labelText’
IsoPlotSldr: no visible global function definition for ‘tclVar’
IsoPlotSldr: no visible global function definition for ‘tklabel’
IsoPlotSldr: no visible binding for global variable ‘labelText’
IsoPlotSldr: no visible global function definition for ‘tkconfigure’
IsoPlotSldr: no visible global function definition for ‘tkscale’
IsoPlotSldr: no visible global function definition for ‘tkgrid’
IsoPlotSldr: no visible global function definition for
‘tkgrid.configure’
IsoPlotSldr: no visible global function definition for ‘tkradiobutton’
IsoPlotSldr: no visible global function definition for ‘tkentry’
IsoPlotSldr : inputDelta: no visible global function definition for
‘tclvalue’
IsoPlotSldr : inputDelta: no visible binding for global variable
‘Delta.table’
IsoPlotSldr : inputDelta: no visible global function definition for
‘tkmessageBox’
IsoPlotSldr : inputDelta: no visible binding for '<<-' assignment to
‘pos’
IsoPlotSldr : inputDelta: no visible binding for '<<-' assignment to
‘delta.now’
IsoPlotSldr: no visible global function definition for ‘tkbutton’
IsoPlotSldr : showSigSAM: no visible binding for '<<-' assignment to
‘siggeneSAM’
IsoPlotSldr : showSigSAM: no visible binding for global variable
‘siggeneSAM’
IsoPlotSldr : showSigSAM: no visible binding for global variable
‘statSAMplot’
IsoPlotSldr : savegene: no visible binding for '<<-' assignment to
‘siggeneSAM’
IsoPlotSldr : saveAllgene: no visible binding for '<<-' assignment to
‘AllgeneSAM’
IsoPlotSldr : showDelta: no visible binding for global variable
‘Delta.table’
IsoPlotSldr: no visible global function definition for ‘tkscrollbar’
IsoPlotSldr : <anonymous>: no visible global function definition for
‘tkyview’
IsoPlotSldr: no visible global function definition for ‘tklistbox’
IsoPlotSldr : <anonymous>: no visible global function definition for
‘tkset’
IsoPlotSldr: no visible global function definition for ‘tkinsert’
IsoPlotSldr: no visible global function definition for
‘tkselection.set’
IsoPlotSldr : draw: no visible binding for '<<-' assignment to ‘pos’
IsoPlotSldr : draw: no visible global function definition for
‘tclvalue’
IsoPlotSldr : draw: no visible binding for '<<-' assignment to
‘delta.now’
IsoPlotSldr : draw: no visible binding for global variable
‘Delta.table’
IsoPlotSldr : draw: no visible binding for global variable ‘pos’
IsoPlotSldr : draw: no visible binding for '<<-' assignment to
‘labelText’
IsoPlotSldr : draw: no visible binding for global variable ‘labelText’
IsoPlotSldr : draw: no visible global function definition for
‘tclvalue<-’
IsoPlotSldr : draw: no visible binding for global variable ‘delta.now’
IsoPlotSldr : CopyToClip: no visible global function definition for
‘tkmessageBox’
IsoPlotSldr : CopyToClip: no visible global function definition for
‘tclvalue’
IsoPlotSldr : CopyToClip: no visible global function definition for
‘tkfocus’
IsoPlotSldr : SaveGraph: no visible global function definition for
‘tclvalue’
IsoPlotSldr : SaveGraph: no visible global function definition for
‘tkgetSaveFile’
IsoPlotSldr : SaveGraph: no visible global function definition for
‘tkmessageBox’
IsoPlotSldr : SaveGraph: no visible global function definition for
‘tkcurselection’
IsoPlotSldr : onExit: no visible binding for '<<-' assignment to
‘ReturnVal’
IsoPlotSldr : onExit: no visible global function definition for
‘tkgrab.release’
IsoPlotSldr : onExit: no visible global function definition for
‘tkdestroy’
IsoRawpMod: no visible global function definition for ‘tkProgressBar’
IsoRawpMod: no visible global function definition for ‘tclvalue<-’
IsoRawpMod: no visible global function definition for
‘setTkProgressBar’
IsoStat: no visible binding for '<<-' assignment to ‘E2Val’
IsoStat: no visible binding for '<<-' assignment to ‘SeE2Val’
IsoStat: no visible binding for '<<-' assignment to ‘MVal’
IsoStat: no visible binding for '<<-' assignment to ‘SeMVal’
IsoStat: no visible binding for '<<-' assignment to ‘WilliamsVal’
IsoStat: no visible binding for '<<-' assignment to ‘SeWilliamsVal’
IsoStat: no visible binding for '<<-' assignment to ‘MarcusVal’
IsoStat: no visible binding for '<<-' assignment to ‘SeMarcusVal’
IsoStat: no visible binding for '<<-' assignment to ‘ModMVal’
IsoStat: no visible binding for '<<-' assignment to ‘SeModMVal’
Isoplot: no visible global function definition for ‘tkmessageBox’
Isoplot: no visible global function definition for ‘tclvalue’
Isoplot: no visible global function definition for ‘tkfocus’
Isoplot: no visible binding for global variable ‘tt’
Isoplot: no visible global function definition for ‘tktoplevel’
Isoplot: no visible global function definition for ‘tkwm.deiconify’
Isoplot: no visible global function definition for ‘tkwm.title’
Isoplot: no visible global function definition for ‘tkframe’
Isoplot: no visible global function definition for ‘tkradiobutton’
Isoplot: no visible global function definition for ‘tclVar’
Isoplot: no visible global function definition for ‘tkconfigure’
Isoplot: no visible global function definition for ‘tkentry’
Isoplot: no visible global function definition for ‘tkgrid’
Isoplot: no visible global function definition for ‘tklabel’
Isoplot: no visible global function definition for ‘tkgrid.configure’
Isoplot: no visible global function definition for ‘tkcheckbutton’
Isoplot : OnOK: no visible global function definition for ‘tkdestroy’
Isoplot : OnOK: no visible global function definition for
‘tkmessageBox’
Isoplot : OnOK: no visible global function definition for ‘tclvalue’
Isoplot : OnOK: no visible global function definition for ‘tkfocus’
Isoplot : OnOK: no visible binding for global variable ‘tt’
Isoplot : OnOK : plotIso: no visible binding for global variable ‘dose’
Isoplot : OnOK : plotIso: no visible binding for global variable
‘exprs’
Isoplot : OnOK: no visible binding for global variable ‘dose’
Isoplot : OnOK: no visible binding for global variable ‘exprs’
Isoplot : OnOK: no visible binding for '<<-' assignment to
‘genenameVal’
Isoplot : OnOK: no visible binding for global variable ‘genenameVal’
Isoplot : onCancel: no visible global function definition for
‘tkgrab.release’
Isoplot : onCancel: no visible global function definition for
‘tkdestroy’
Isoplot : onCancel: no visible global function definition for
‘tkwm.deiconify’
Isoplot : onCancel: no visible binding for global variable ‘tt’
Isoplot : onCancel: no visible global function definition for ‘tkfocus’
Isoplot: no visible global function definition for ‘tkbutton’
IsopvalPlot: no visible global function definition for ‘tkmessageBox’
IsopvalPlot: no visible global function definition for ‘tclvalue’
IsopvalPlot: no visible global function definition for ‘tkfocus’
IsopvalPlot: no visible binding for global variable ‘tt’
IsopvalPlot: no visible global function definition for ‘tktoplevel’
IsopvalPlot: no visible global function definition for ‘tkwm.deiconify’
IsopvalPlot: no visible global function definition for ‘tkwm.title’
IsopvalPlot: no visible global function definition for ‘tkgrab.set’
IsopvalPlot: no visible global function definition for ‘tkframe’
IsopvalPlot: no visible global function definition for ‘tkradiobutton’
IsopvalPlot: no visible global function definition for ‘tclVar’
IsopvalPlot: no visible global function definition for ‘tkconfigure’
IsopvalPlot: no visible global function definition for ‘tkentry’
IsopvalPlot: no visible global function definition for ‘tkgrid’
IsopvalPlot: no visible global function definition for ‘tklabel’
IsopvalPlot: no visible global function definition for
‘tkgrid.configure’
IsopvalPlot : OnOK: no visible global function definition for
‘tkdestroy’
IsopvalPlot : OnOK: no visible global function definition for
‘tkmessageBox’
IsopvalPlot : OnOK: no visible global function definition for
‘tclvalue’
IsopvalPlot : OnOK: no visible global function definition for ‘tkfocus’
IsopvalPlot : OnOK: no visible binding for global variable ‘tt’
IsopvalPlot : OnOK : plotIso: no visible binding for global variable
‘dose’
IsopvalPlot : OnOK : plotIso: no visible binding for global variable
‘exprs’
IsopvalPlot : OnOK : plotIso: no visible binding for global variable
‘SeedNum’
IsopvalPlot : OnOK: no visible binding for global variable ‘exprs’
IsopvalPlot : onCancel: no visible global function definition for
‘tkgrab.release’
IsopvalPlot : onCancel: no visible global function definition for
‘tkdestroy’
IsopvalPlot: no visible global function definition for ‘tkbutton’
IsoqqstatMOD: no visible binding for global variable ‘dose’
IsoqqstatMOD: no visible binding for global variable ‘exprs2SAM’
IsoqqstatMOD: no visible binding for global variable ‘fudgeVal’
IsoqqstatMOD: no visible global function definition for ‘tkProgressBar’
IsoqqstatMOD: no visible global function definition for
‘setTkProgressBar’
IsoqqstatMOD: no visible global function definition for ‘tkgrab.set’
IsoqqstatMOD: no visible binding for global variable ‘samPermute’
IsoqqstatMOD: no visible global function definition for ‘tclvalue<-’
IsoqqstatMOD: no visible binding for global variable ‘NumPermval’
Permutation: no visible global function definition for ‘tkmessageBox’
Permutation: no visible global function definition for ‘tclvalue’
Permutation: no visible global function definition for ‘tkfocus’
Permutation: no visible binding for global variable ‘tt’
Permutation: no visible global function definition for ‘tktoplevel’
Permutation: no visible global function definition for ‘tkwm.title’
Permutation: no visible global function definition for ‘tkframe’
Permutation: no visible global function definition for ‘tkradiobutton’
Permutation: no visible global function definition for ‘tclVar’
Permutation: no visible global function definition for ‘tkconfigure’
Permutation: no visible global function definition for ‘tkentry’
Permutation: no visible global function definition for ‘tkgrid’
Permutation: no visible global function definition for
‘tkgrid.configure’
Permutation: no visible global function definition for ‘tklabel’
Permutation: no visible global function definition for ‘tkcheckbutton’
Permutation: no visible global function definition for ‘tkbutton’
Permutation: no visible binding for '<<-' assignment to ‘SavefileName’
Permutation: no visible binding for global variable ‘SavefileName’
Permutation : Calc.Permut: no visible global function definition for
‘tkmessageBox’
Permutation : Calc.Permut: no visible global function definition for
‘tclvalue’
Permutation : Calc.Permut: no visible global function definition for
‘tkfocus’
Permutation : Calc.Permut: no visible binding for global variable
‘asym’
Permutation : Calc.Permut: no visible global function definition for
‘tkconfigure’
Permutation : Calc.Permut: no visible global function definition for
‘tclvalue<-’
Permutation : Calc.Permut: no visible binding for global variable
‘exprs’
Permutation : Calc.Permut: no visible binding for global variable
‘dose’
Permutation : Calc.Permut: no visible binding for global variable
‘SeedNum’
Permutation : Calc.Permut: no visible global function definition for
‘tkdelete’
Permutation : Calc.Permut: no visible binding for global variable
‘treeWidget’
Permutation : Calc.Permut: no visible global function definition for
‘tkinsert’
Permutation : Calc.Permut: no visible binding for global variable
‘fileRwd’
Permutation: no visible binding for '<<-' assignment to ‘PermuteText3’
Permutation: no visible binding for global variable ‘PermuteText3’
Permutation: no visible binding for '<<-' assignment to ‘PermuteText4’
Permutation: no visible binding for global variable ‘PermuteText4’
Permutation: no visible binding for '<<-' assignment to ‘pvalName’
Permutation: no visible binding for global variable ‘pvalName’
Permutation : PermResBut: no visible global function definition for
‘tkmessageBox’
Permutation : PermResBut: no visible global function definition for
‘tclvalue’
Permutation : PermResBut: no visible global function definition for
‘tkfocus’
Permutation : PermResBut: no visible global function definition for
‘tkconfigure’
Permutation : PermResBut: no visible binding for global variable
‘exprs2Perm’
Permutation : PermResBut: no visible binding for '<<-' assignment to
‘meandifPerm’
Permutation : PermResBut: no visible binding for global variable ‘dose’
Permutation : PermResBut: no visible binding for global variable
‘meandifPerm’
Permutation : PermResBut: no visible binding for global variable
‘RawPval’
Permutation : PermResBut: no visible binding for '<<-' assignment to
‘FDRval’
Permutation : PermResBut: no visible global function definition for
‘tkdelete’
Permutation : PermResBut: no visible binding for global variable
‘treeWidget’
Permutation : PermResBut: no visible global function definition for
‘tkinsert’
Permutation : PermResBut: no visible binding for global variable
‘FDRval’
Permutation : PermResBut: no visible binding for global variable
‘matchID’
Permutation : PermResBut: no visible binding for global variable
‘Direction’
Permutation : PermResBut: no visible binding for global variable
‘ProbeID’
Permutation : savesiggene: no visible binding for global variable
‘listgene’
Permutation : saveallgene: no visible binding for global variable
‘listgene2’
Permutation : PlotBut: no visible global function definition for
‘tkmessageBox’
Permutation : PlotBut: no visible global function definition for
‘tclvalue’
Permutation : PlotBut: no visible global function definition for
‘tkfocus’
Permutation : PlotBut: no visible global function definition for
‘tkconfigure’
Permutation : PlotBut: no visible binding for '<<-' assignment to
‘stat.list2’
Permutation : PlotBut: no visible binding for '<<-' assignment to
‘twosd.pvalmat’
Permutation : PlotBut: no visible binding for global variable
‘twosided.RawPval’
Permutation : PlotBut: no visible binding for global variable
‘twosd.pvalmat’
Permutation : PlotBut: no visible binding for global variable
‘stat.list2’
Permutation : PlotBut : rankPlot: no visible binding for global
variable ‘twosd.pvalmat’
Permutation : PlotBut : rankPlot: no visible binding for global
variable ‘matchID’
Permutation : PlotBut : rankPlot: no visible binding for global
variable ‘linecd’
Permutation : PlotBut : rankPlot: no visible binding for global
variable ‘FDRval’
Permutation : PlotBut : E2vsDiffPlot: no visible binding for global
variable ‘meandifPerm’
Permutation : onExit: no visible global function definition for
‘tkgrab.release’
Permutation : onExit: no visible global function definition for
‘tkdestroy’
PermuteSAM: no visible global function definition for ‘tkmessageBox’
PermuteSAM: no visible global function definition for ‘tclvalue’
PermuteSAM: no visible global function definition for ‘tkfocus’
PermuteSAM: no visible binding for global variable ‘tt’
PermuteSAM: no visible binding for '<<-' assignment to ‘samPermute’
PermuteSAM: no visible global function definition for ‘tktoplevel’
PermuteSAM: no visible global function definition for ‘tkwm.title’
PermuteSAM: no visible binding for global variable ‘samPermute’
PermuteSAM: no visible global function definition for ‘tkframe’
PermuteSAM: no visible global function definition for ‘tkradiobutton’
PermuteSAM: no visible global function definition for ‘tclVar’
PermuteSAM: no visible global function definition for ‘tkconfigure’
PermuteSAM: no visible global function definition for ‘tkentry’
PermuteSAM: no visible global function definition for ‘tkgrid’
PermuteSAM: no visible global function definition for
‘tkgrid.configure’
PermuteSAM: no visible global function definition for ‘tklabel’
PermuteSAM: no visible global function definition for ‘tkcheckbutton’
PermuteSAM : ShowSEplot: no visible global function definition for
‘tclvalue’
PermuteSAM : ShowSEplot: no visible global function definition for
‘tkmessageBox’
PermuteSAM : ShowSEplot: no visible binding for global variable ‘exprs’
PermuteSAM : ShowSEplot: no visible binding for global variable
‘matchIDtemp’
PermuteSAM : ShowSEplot: no visible binding for global variable ‘dose’
PermuteSAM : ShowSEplot: no visible binding for '<<-' assignment to
‘matchIDtemp’
PermuteSAM: no visible global function definition for ‘tkbutton’
PermuteSAM: no visible binding for '<<-' assignment to ‘SavefileName’
PermuteSAM: no visible binding for global variable ‘SavefileName’
PermuteSAM : Calc.PermutSAM: no visible global function definition for
‘tclvalue’
PermuteSAM : Calc.PermutSAM: no visible binding for '<<-' assignment to
‘rbVal2’
PermuteSAM : Calc.PermutSAM: no visible binding for '<<-' assignment to
‘fudgeVal’
PermuteSAM : Calc.PermutSAM: no visible global function definition for
‘tkconfigure’
PermuteSAM : Calc.PermutSAM: no visible binding for global variable
‘samPermute’
PermuteSAM : Calc.PermutSAM: no visible global function definition for
‘tclvalue<-’
PermuteSAM : Calc.PermutSAM: no visible binding for global variable
‘rbVal2’
PermuteSAM : Calc.PermutSAM: no visible global function definition for
‘tkmessageBox’
PermuteSAM : Calc.PermutSAM: no visible global function definition for
‘tkfocus’
PermuteSAM : Calc.PermutSAM: no visible binding for '<<-' assignment to
‘exprs2SAM’
PermuteSAM : Calc.PermutSAM: no visible binding for global variable
‘exprs’
PermuteSAM : Calc.PermutSAM: no visible binding for '<<-' assignment to
‘matchID’
PermuteSAM : Calc.PermutSAM: no visible binding for global variable
‘exprs2SAM’
PermuteSAM : Calc.PermutSAM: no visible binding for global variable
‘dose’
PermuteSAM : Calc.PermutSAM: no visible binding for global variable
‘SeedNum’
PermuteSAM : Calc.PermutSAM: no visible binding for global variable
‘fudgeVal’
PermuteSAM : Calc.PermutSAM: no visible global function definition for
‘tkdelete’
PermuteSAM : Calc.PermutSAM: no visible binding for global variable
‘treeWidget’
PermuteSAM : Calc.PermutSAM: no visible global function definition for
‘tkinsert’
PermuteSAM : Calc.PermutSAM: no visible binding for '<<-' assignment to
‘DirectionSAM’
PermuteSAM : Calc.PermutSAM: no visible binding for '<<-' assignment to
‘MeanDiffSAM’
PermuteSAM : Calc.PermutSAM: no visible binding for global variable
‘MeanDiffSAM’
PermuteSAM : Calc.PermutSAM: no visible binding for global variable
‘fileRwd’
PermuteSAM: no visible binding for '<<-' assignment to ‘PermuteText1’
PermuteSAM: no visible binding for global variable ‘PermuteText1’
PermuteSAM: no visible binding for '<<-' assignment to ‘PermuteText2’
PermuteSAM: no visible binding for global variable ‘PermuteText2’
PermuteSAM: no visible binding for '<<-' assignment to ‘pvalName’
PermuteSAM: no visible binding for global variable ‘pvalName’
PermuteSAM : onCancel: no visible binding for global variable
‘SAMRes.temp’
PermuteSAM : onCancel: no visible binding for global variable
‘exprs2SAM.temp’
PermuteSAM : onCancel: no visible global function definition for
‘tkdestroy’
PermuteSAM : onCancel: no visible binding for global variable
‘samPermute’
PermuteSAM : onOK: no visible binding for global variable ‘SAMRes.temp’
PermuteSAM : onOK: no visible binding for global variable
‘exprs2SAM.temp’
PermuteSAM : onOK: no visible global function definition for
‘tkdestroy’
PermuteSAM : onOK: no visible binding for global variable ‘samPermute’
Plot2: no visible global function definition for ‘tktoplevel’
Plot2: no visible global function definition for ‘tkwm.title’
Plot2: no visible global function definition for ‘tkframe’
Plot2: no visible global function definition for ‘tkscrollbar’
Plot2 : <anonymous>: no visible global function definition for
‘tkyview’
Plot2: no visible global function definition for ‘tklistbox’
Plot2 : <anonymous>: no visible global function definition for ‘tkset’
Plot2: no visible global function definition for ‘tkinsert’
Plot2: no visible global function definition for ‘tkselection.set’
Plot2 : CopyToClip: no visible global function definition for
‘tkmessageBox’
Plot2 : SaveGraph: no visible global function definition for ‘tclvalue’
Plot2 : SaveGraph: no visible global function definition for
‘tkgetSaveFile’
Plot2 : SaveGraph: no visible global function definition for
‘tkmessageBox’
Plot2 : SaveGraph: no visible global function definition for
‘tkcurselection’
Plot2: no visible global function definition for ‘tkbutton’
Plot2: no visible global function definition for ‘tkgrid’
Plot2: no visible global function definition for ‘tklabel’
PlotFPDlt: no visible global function definition for ‘tkmessageBox’
PlotFPDlt: no visible binding for '<<-' assignment to ‘AllFDR’
PlotFPDlt: no visible binding for global variable ‘SAMRes’
PlotFPDlt: no visible binding for global variable ‘statUsed’
PlotFPDlt: no visible binding for global variable ‘AllFDR’
PlotFPDlt : plotFPD: no visible binding for global variable ‘SAMRes’
PlotFdrDlt: no visible global function definition for ‘tkmessageBox’
PlotFdrDlt: no visible binding for '<<-' assignment to ‘AllFDR’
PlotFdrDlt: no visible binding for global variable ‘SAMRes’
PlotFdrDlt: no visible binding for global variable ‘statUsed’
PlotFdrDlt: no visible binding for global variable ‘AllFDR’
PlotSigDlt: no visible global function definition for ‘tkmessageBox’
PlotSigDlt: no visible binding for '<<-' assignment to ‘AllFDR’
PlotSigDlt: no visible binding for global variable ‘SAMRes’
PlotSigDlt: no visible binding for global variable ‘statUsed’
PlotSigDlt: no visible binding for global variable ‘AllFDR’
SEPlot: no visible binding for global variable ‘SeModMVal’
SaveGraph: no visible global function definition for ‘tclvalue’
SaveGraph: no visible global function definition for ‘tkgetSaveFile’
SaveGraph: no visible global function definition for ‘tkmessageBox’
SaveGraph: no visible global function definition for ‘x’
SaveGraph: no visible global function definition for ‘tkbutton’
SaveGraph: no visible binding for global variable ‘buttonFramePlot’
SaveGraph: no visible binding for global variable ‘CopyToClip’
SaveGraph: no visible global function definition for ‘tkgrid’
SaveGraph: no visible binding for global variable ‘img’
Setseed: no visible global function definition for ‘tktoplevel’
Setseed: no visible global function definition for ‘tkwm.deiconify’
Setseed: no visible global function definition for ‘tkwm.title’
Setseed: no visible global function definition for ‘tkgrab.set’
Setseed: no visible global function definition for ‘tkfocus’
Setseed: no visible global function definition for ‘tclVar’
Setseed: no visible global function definition for ‘tkentry’
Setseed: no visible global function definition for ‘tkgrid’
Setseed: no visible global function definition for ‘tklabel’
Setseed : OnOK: no visible binding for '<<-' assignment to ‘SeedNum’
Setseed : OnOK: no visible global function definition for ‘tclvalue’
Setseed : OnOK: no visible binding for global variable ‘SeedNum’
Setseed : OnOK: no visible global function definition for ‘tkdestroy’
Setseed : OnOK: no visible global function definition for ‘tkfocus’
Setseed : OnOK: no visible binding for global variable ‘tt’
Setseed: no visible global function definition for ‘tkbutton’
Setseed: no visible global function definition for ‘tkbind’
UserPlot: no visible global function definition for ‘tktoplevel’
UserPlot: no visible global function definition for ‘tkwm.title’
UserPlot: no visible global function definition for ‘tkframe’
UserPlot: no visible global function definition for ‘tkscrollbar’
UserPlot : <anonymous>: no visible global function definition for
‘tkyview’
UserPlot: no visible global function definition for ‘tklistbox’
UserPlot : <anonymous>: no visible global function definition for
‘tkset’
UserPlot: no visible global function definition for ‘tkinsert’
UserPlot: no visible global function definition for ‘tkselection.set’
UserPlot: no visible global function definition for ‘tklabel’
UserPlot: no visible global function definition for ‘tkgrid’
UserPlot: no visible global function definition for ‘tclVar’
UserPlot: no visible global function definition for ‘tkentry’
UserPlot : assignVariable1: no visible global function definition for
‘tkcurselection’
UserPlot : assignVariable1: no visible global function definition for
‘tclvalue<-’
UserPlot: no visible global function definition for ‘tkbutton’
UserPlot: no visible global function definition for ‘tkcheckbutton’
UserPlot: no visible global function definition for ‘tkconfigure’
UserPlot : assignVariable2: no visible global function definition for
‘tkcurselection’
UserPlot : assignVariable2: no visible global function definition for
‘tclvalue<-’
UserPlot: no visible global function definition for ‘tkgrid.configure’
UserPlot : OnOK : Userplot: no visible global function definition for
‘tclvalue’
UserPlot : OnOK : Userplot: no visible global function definition for
‘tkmessageBox’
UserPlot : OnOK : Userplot: no visible global function definition for
‘tkdestroy’
UserPlot : onCancel: no visible binding for '<<-' assignment to
‘ReturnVal’
UserPlot : onCancel: no visible global function definition for
‘tkgrab.release’
UserPlot : onCancel: no visible global function definition for
‘tkdestroy’
UserPlotting: no visible global function definition for ‘tkmessageBox’
UserPlotting: no visible binding for '<<-' assignment to ‘ExactPval.E2’
UserPlotting: no visible binding for global variable ‘pval.Asymp’
UserPlotting: no visible binding for '<<-' assignment to ‘FoldChange’
UserPlotting: no visible binding for global variable ‘Mu.Diff.Asymp’
UserPlotting: no visible binding for '<<-' assignment to ‘E2.value’
UserPlotting: no visible binding for global variable ‘E2Val.Asymp’
UserPlotting: no visible binding for global variable ‘E2Val’
UserPlotting: no visible binding for '<<-' assignment to ‘Marcus.value’
UserPlotting: no visible binding for global variable ‘MarcusVal’
UserPlotting: no visible binding for '<<-' assignment to
‘ModifiedM.value’
UserPlotting: no visible binding for global variable ‘ModMVal’
UserPlotting: no visible binding for '<<-' assignment to ‘M.value’
UserPlotting: no visible binding for global variable ‘MVal’
UserPlotting: no visible binding for '<<-' assignment to
‘Williams.value’
UserPlotting: no visible binding for global variable ‘WilliamsVal’
UserPlotting: no visible binding for '<<-' assignment to
‘twosided.RawPval’
UserPlotting: no visible binding for global variable ‘RawPval’
UserPlotting: no visible binding for '<<-' assignment to
‘PermutationPval.E2’
UserPlotting: no visible binding for global variable ‘twosided.RawPval’
UserPlotting: no visible binding for '<<-' assignment to
‘PermutationPval.Williams’
UserPlotting: no visible binding for '<<-' assignment to
‘PermutationPval.Marcus’
UserPlotting: no visible binding for '<<-' assignment to
‘PermutationPval.M’
UserPlotting: no visible binding for '<<-' assignment to
‘PermutationPval.ModM’
UserPlotting: no visible binding for global variable ‘meandifPerm’
UserPlotting: no visible binding for global variable ‘dose’
UserPlotting: no visible binding for global variable ‘exprs2Perm’
UserPlotting: no visible binding for global variable ‘SAMRes’
UserPlotting: no visible binding for global variable ‘MeanDiffSAM’
UserPlotting: no visible binding for global variable ‘exprs2SAM’
UserPlotting: no visible binding for '<<-' assignment to ‘SAM.M.value’
UserPlotting: no visible binding for '<<-' assignment to ‘SAM.E2.value’
UserPlotting: no visible binding for '<<-' assignment to
‘SAM.Marcus.value’
UserPlotting: no visible binding for '<<-' assignment to
‘SAM.Williams.value’
UserPlotting: no visible binding for '<<-' assignment to
‘SAM.ModifiedM.value’
UserPlotting: no visible binding for '<<-' assignment to ‘M.q.value’
UserPlotting: no visible binding for '<<-' assignment to ‘E2.q.value’
UserPlotting: no visible binding for '<<-' assignment to
‘Marcus.q.value’
UserPlotting: no visible binding for '<<-' assignment to
‘Williams.q.value’
UserPlotting: no visible binding for '<<-' assignment to
‘ModifiedM.q.value’
about: no visible global function definition for ‘tkfont.create’
about: no visible global function definition for ‘tktoplevel’
about: no visible global function definition for ‘tkframe’
about: no visible global function definition for ‘tkwm.title’
about: no visible global function definition for ‘tkgrid’
about: no visible global function definition for ‘tklabel’
about: no visible global function definition for ‘tkgrid.configure’
browse: no visible global function definition for ‘tclvalue’
browse: no visible global function definition for ‘tkgetOpenFile’
browse: no visible global function definition for ‘tkmessageBox’
browse: no visible global function definition for ‘tktoplevel’
browse: no visible global function definition for ‘tkwm.title’
browse: no visible global function definition for ‘tkgrab.set’
browse: no visible global function definition for ‘tkfocus’
browse: no visible global function definition for ‘tkframe’
browse: no visible global function definition for ‘tkscrollbar’
browse : <anonymous>: no visible global function definition for
‘tkyview’
browse: no visible global function definition for ‘tklistbox’
browse : <anonymous>: no visible global function definition for ‘tkset’
browse: no visible global function definition for ‘tkinsert’
browse: no visible global function definition for ‘tkselection.set’
browse: no visible global function definition for ‘tklabel’
browse: no visible global function definition for ‘tkgrid’
browse: no visible global function definition for ‘tkgrid.configure’
browse : onCancel: no visible global function definition for
‘tkgrab.release’
browse : onCancel: no visible global function definition for
‘tkdestroy’
browse : onCancel: no visible global function definition for
‘tkwm.deiconify’
browse : onCancel: no visible global function definition for ‘tkfocus’
browse : OnOK: no visible global function definition for
‘tkcurselection’
browse : OnOK: no visible binding for '<<-' assignment to ‘pvalName’
browse : OnOK: no visible binding for global variable ‘pvalName’
browse : OnOK: no visible global function definition for ‘tclvalue<-’
browse : OnOK : wrong: no visible global function definition for
‘tkmessageBox’
browse : OnOK: no visible binding for global variable ‘exprs’
browse : OnOK: no visible binding for '<<-' assignment to ‘StatVal’
browse : OnOK: no visible binding for global variable ‘dose’
browse : OnOK: no visible global function definition for ‘tkdelete’
browse : OnOK: no visible binding for global variable ‘treeWidget’
browse : OnOK: no visible global function definition for ‘tkinsert’
browse : OnOK: no visible global function definition for ‘tkmessageBox’
browse : OnOK: no visible global function definition for ‘tkdestroy’
browse: no visible global function definition for ‘tkbutton’
browse2: no visible global function definition for ‘tclvalue’
browse2: no visible global function definition for ‘tkgetOpenFile’
browse2: no visible global function definition for ‘tkmessageBox’
browse2: no visible global function definition for ‘tktoplevel’
browse2: no visible global function definition for ‘tkwm.title’
browse2: no visible global function definition for ‘tkgrab.set’
browse2: no visible global function definition for ‘tkfocus’
browse2: no visible global function definition for ‘tkframe’
browse2: no visible global function definition for ‘tkscrollbar’
browse2 : <anonymous>: no visible global function definition for
‘tkyview’
browse2: no visible global function definition for ‘tklistbox’
browse2 : <anonymous>: no visible global function definition for
‘tkset’
browse2: no visible global function definition for ‘tkinsert’
browse2: no visible global function definition for ‘tkselection.set’
browse2: no visible global function definition for ‘tklabel’
browse2: no visible global function definition for ‘tkgrid’
browse2: no visible global function definition for ‘tkgrid.configure’
browse2 : onCancel: no visible global function definition for
‘tkgrab.release’
browse2 : onCancel: no visible global function definition for
‘tkdestroy’
browse2 : onCancel: no visible global function definition for
‘tkwm.deiconify’
browse2 : onCancel: no visible global function definition for ‘tkfocus’
browse2 : OnOK: no visible global function definition for
‘tkcurselection’
browse2 : OnOK: no visible binding for '<<-' assignment to ‘pvalName’
browse2 : OnOK: no visible binding for global variable ‘pvalName’
browse2 : OnOK: no visible global function definition for ‘tclvalue<-’
browse2 : OnOK: no visible binding for global variable ‘exprs’
browse2 : OnOK: no visible binding for '<<-' assignment to
‘MeanDiffSAM’
browse2 : OnOK: no visible binding for global variable ‘dose’
browse2 : OnOK: no visible global function definition for ‘tkdelete’
browse2 : OnOK: no visible binding for global variable ‘treeWidget’
browse2 : OnOK: no visible global function definition for ‘tkinsert’
browse2 : OnOK: no visible global function definition for ‘tkdestroy’
browse2: no visible global function definition for ‘tkbutton’
doGORIC: no visible global function definition for ‘tkmessageBox’
doGORIC: no visible global function definition for ‘tclvalue’
doGORIC: no visible global function definition for ‘tkfocus’
doGORIC: no visible binding for global variable ‘tt’
doGORIC: no visible global function definition for ‘tktoplevel’
doGORIC: no visible global function definition for ‘tkwm.title’
doGORIC: no visible global function definition for ‘tkframe’
doGORIC: no visible global function definition for ‘tkgrid’
doGORIC: no visible global function definition for ‘tklabel’
doGORIC: no visible global function definition for ‘tclVar’
doGORIC: no visible global function definition for ‘tkentry’
doGORIC: no visible global function definition for ‘tkgrid.configure’
doGORIC: no visible global function definition for ‘tkradiobutton’
doGORIC: no visible global function definition for ‘tkconfigure’
doGORIC : OnOK: no visible global function definition for ‘tclvalue’
doGORIC : OnOK: no visible binding for global variable ‘exprs’
doGORIC : OnOK: no visible global function definition for
‘tkmessageBox’
doGORIC : OnOK: no visible binding for '<<-' assignment to
‘response.gene’
doGORIC : OnOK: no visible binding for global variable ‘dose’
doGORIC : OnOK: no visible binding for '<<-' assignment to ‘models’
doGORIC : OnOK: no visible binding for global variable ‘models’
doGORIC : OnOK: no visible binding for '<<-' assignment to
‘GORICoutput’
doGORIC : OnOK: no visible binding for '<<-' assignment to
‘modelSelected’
doGORIC : OnOK: no visible binding for global variable ‘GORICoutput’
doGORIC : OnOK: no visible binding for '<<-' assignment to
‘maxProbability’
doGORIC : OnOK: no visible global function definition for ‘tkdelete’
doGORIC : OnOK: no visible binding for global variable ‘treeWidget’
doGORIC : OnOK: no visible global function definition for ‘tkinsert’
doGORIC : OnOK: no visible binding for global variable ‘modelSelected’
doGORIC : OnOK: no visible binding for global variable ‘maxProbability’
doGORIC: no visible global function definition for ‘tkbutton’
doGORIC : saveResults: no visible binding for global variable
‘GORICoutput’
doGORIC : PlotAll : PlotAllModels: no visible binding for global
variable ‘GORICoutput’
doGORIC : PlotAll: no visible global function definition for
‘tkconfigure’
doGORIC : PlotBest : PlotBestModel: no visible binding for global
variable ‘modelSelected’
doGORIC : PlotBest: no visible global function definition for
‘tkconfigure’
doGORIC : PlotModel : PlotSelectedModel: no visible global function
definition for ‘tclvalue’
doGORIC : PlotModel: no visible global function definition for
‘tkconfigure’
doGORIC : onExit: no visible global function definition for ‘tkdestroy’
doORCME: no visible global function definition for ‘tkmessageBox’
doORCME: no visible global function definition for ‘tclvalue’
doORCME: no visible global function definition for ‘tkfocus’
doORCME: no visible binding for global variable ‘tt’
doORCME: no visible global function definition for ‘tktoplevel’
doORCME: no visible global function definition for ‘tkwm.title’
doORCME: no visible global function definition for ‘tkgrid’
doORCME: no visible global function definition for ‘tklabel’
doORCME: no visible global function definition for ‘tclVar’
doORCME: no visible global function definition for ‘tkentry’
doORCME: no visible global function definition for ‘tkgrid.configure’
doORCME: no visible global function definition for ‘tkradiobutton’
doORCME: no visible global function definition for ‘tkconfigure’
doORCME : calculateLambdaK: no visible global function definition for
‘tclvalue’
doORCME : calculateLambdaK: no visible binding for global variable
‘exprs’
doORCME : calculateLambdaK: no visible binding for global variable
‘dose’
doORCME : calculateLambdaK: no visible global function definition for
‘tclvalue<-’
doORCME : calculateLambdaK: no visible global function definition for
‘tkmessageBox’
doORCME: no visible global function definition for ‘tkbutton’
doORCME : OnOK: no visible global function definition for ‘tclvalue’
doORCME : OnOK: no visible global function definition for
‘tkmessageBox’
doORCME : OnOK: no visible binding for global variable ‘exprs’
doORCME : OnOK: no visible binding for global variable ‘dose’
doORCME : OnOK: no visible binding for '<<-' assignment to
‘clusteringData’
doORCME : OnOK: no visible binding for '<<-' assignment to
‘ORCMEoutput’
doORCME : OnOK: no visible binding for global variable ‘clusteringData’
doORCME : OnOK: no visible binding for '<<-' assignment to ‘nClusters’
doORCME : OnOK: no visible binding for global variable ‘ORCMEoutput’
doORCME : OnOK: no visible global function definition for ‘tkdelete’
doORCME : OnOK: no visible binding for global variable ‘treeWidget’
doORCME : OnOK: no visible global function definition for ‘tkinsert’
doORCME : OnOK: no visible binding for global variable ‘nClusters’
doORCME: no visible global function definition for ‘tkbind’
doORCME : saveClusters: no visible binding for global variable
‘ORCMEoutput’
doORCME : onExit: no visible global function definition for ‘tkdestroy’
doORIClust: no visible global function definition for ‘tkmessageBox’
doORIClust: no visible global function definition for ‘tclvalue’
doORIClust: no visible global function definition for ‘tkfocus’
doORIClust: no visible binding for global variable ‘tt’
doORIClust: no visible global function definition for ‘tktoplevel’
doORIClust: no visible global function definition for ‘tkwm.title’
doORIClust: no visible global function definition for ‘tkframe’
doORIClust: no visible global function definition for ‘tclVar’
doORIClust: no visible global function definition for ‘tkentry’
doORIClust: no visible global function definition for ‘tkgrid’
doORIClust: no visible global function definition for ‘tklabel’
doORIClust: no visible global function definition for
‘tkgrid.configure’
doORIClust: no visible global function definition for ‘tkradiobutton’
doORIClust: no visible global function definition for ‘tkconfigure’
doORIClust: no visible global function definition for ‘tkcheckbutton’
doORIClust : OnOK: no visible global function definition for ‘tclvalue’
doORIClust : OnOK: no visible binding for global variable ‘exprs’
doORIClust : OnOK: no visible global function definition for
‘tkmessageBox’
doORIClust : OnOK: no visible binding for '<<-' assignment to
‘oriccOutput’
doORIClust : OnOK: no visible binding for global variable ‘dose’
doORIClust : OnOK: no visible binding for global variable ‘oriccOutput’
doORIClust : OnOK: no visible global function definition for ‘tkfocus’
doORIClust : OnOK: no visible binding for global variable ‘tt’
doORIClust : OnOK: no visible binding for '<<-' assignment to
‘nClustersORICC’
doORIClust : OnOK: no visible global function definition for ‘tkdelete’
doORIClust : OnOK: no visible binding for global variable ‘treeWidget’
doORIClust : OnOK: no visible global function definition for ‘tkinsert’
doORIClust : OnOK: no visible binding for global variable
‘nClustersORICC’
doORIClust : OnOK: no visible global function definition for ‘readJpeg’
doORIClust: no visible global function definition for ‘tkbutton’
doORIClust : saveClusters: no visible binding for global variable
‘oriccOutput’
doORIClust : onExit: no visible global function definition for
‘tkdestroy’
exit: no visible global function definition for ‘tkmessageBox’
exit: no visible global function definition for ‘tclvalue’
exit: no visible global function definition for ‘tkdestroy’
exit: no visible binding for global variable ‘tt’
exit: no visible global function definition for ‘tkfocus’
get.ResSAM: no visible binding for global variable ‘delta.now’
get.ResSAM: no visible binding for global variable ‘AllFDR’
get.ResSAM: no visible binding for global variable ‘SAMRes’
get.ResSAM: no visible binding for global variable ‘statSAMplot’
get.ResSAM: no visible binding for global variable ‘exprs2SAM’
get.ResSAM: no visible binding for global variable ‘MeanDiffSAM’
get.ResSAM: no visible binding for global variable ‘DirectionSAM’
getDose: no visible global function definition for ‘tclvalue’
getDose: no visible global function definition for ‘tkgetOpenFile’
getDose: no visible binding for '<<-' assignment to ‘fileDose’
getDose: no visible binding for global variable ‘fileDose’
getDose: no visible global function definition for ‘tclvalue<-’
getDose: no visible global function definition for ‘tkmessageBox’
getExprs: no visible global function definition for ‘tclvalue’
getExprs: no visible global function definition for ‘tkgetOpenFile’
getExprs: no visible binding for '<<-' assignment to ‘fileExprs’
getExprs: no visible binding for global variable ‘fileExprs’
getExprs: no visible global function definition for ‘tclvalue<-’
getExprs: no visible global function definition for ‘tkmessageBox’
loadDataSet: no visible global function definition for ‘tclvalue’
loadDataSet: no visible global function definition for ‘tkgetOpenFile’
loadDataSet: no visible global function definition for ‘tkmessageBox’
loadDataSet: no visible global function definition for ‘tktoplevel’
loadDataSet: no visible global function definition for ‘tkwm.deiconify’
loadDataSet: no visible binding for global variable ‘tt’
loadDataSet: no visible global function definition for ‘tkwm.title’
loadDataSet: no visible global function definition for ‘tkgrab.set’
loadDataSet: no visible global function definition for ‘tkfocus’
loadDataSet: no visible global function definition for ‘tkframe’
loadDataSet: no visible global function definition for ‘tkscrollbar’
loadDataSet : <anonymous>: no visible global function definition for
‘tkyview’
loadDataSet: no visible global function definition for ‘tklistbox’
loadDataSet : <anonymous>: no visible global function definition for
‘tkset’
loadDataSet: no visible global function definition for ‘tkinsert’
loadDataSet: no visible global function definition for
‘tkselection.set’
loadDataSet: no visible global function definition for ‘tklabel’
loadDataSet: no visible global function definition for ‘tclVar’
loadDataSet: no visible global function definition for ‘tkentry’
loadDataSet : assignVariable1: no visible global function definition
for ‘tkcurselection’
loadDataSet : assignVariable1: no visible global function definition
for ‘tclvalue<-’
loadDataSet: no visible global function definition for ‘tkbutton’
loadDataSet: no visible global function definition for ‘tkgrid’
loadDataSet : assignVariable2: no visible global function definition
for ‘tkcurselection’
loadDataSet : assignVariable2: no visible global function definition
for ‘tclvalue<-’
loadDataSet: no visible global function definition for
‘tkgrid.configure’
loadDataSet : OnOK: no visible global function definition for
‘tclvalue’
loadDataSet : OnOK: no visible global function definition for
‘tkdelete’
loadDataSet : OnOK: no visible binding for global variable ‘treeWidget’
loadDataSet : OnOK: no visible global function definition for
‘tkinsert’
loadDataSet : OnOK: no visible global function definition for
‘tkmessageBox’
loadDataSet : OnOK: no visible global function definition for
‘tkdestroy’
loadDataSet : OnOK: no visible global function definition for ‘tkfocus’
loadDataSet : OnOK: no visible binding for global variable ‘tt’
loadDataSet : onCancel: no visible binding for '<<-' assignment to
‘ReturnVal’
loadDataSet : onCancel: no visible global function definition for
‘tkgrab.release’
loadDataSet : onCancel: no visible global function definition for
‘tkdestroy’
loadDataSet : onCancel: no visible global function definition for
‘tkwm.deiconify’
loadDataSet : onCancel: no visible binding for global variable ‘tt’
loadDataSet : onCancel: no visible global function definition for
‘tkfocus’
onHelpIsoGene: no visible global function definition for
‘tkgrab.release’
openFile: no visible global function definition for ‘tktoplevel’
openFile: no visible global function definition for ‘tkwm.title’
openFile: no visible global function definition for ‘tkgrab.set’
openFile: no visible global function definition for ‘tkfocus’
openFile: no visible global function definition for ‘tkframe’
openFile: no visible global function definition for ‘tkbutton’
openFile: no visible binding for '<<-' assignment to ‘fileDose’
openFile: no visible global function definition for ‘tclVar’
openFile: no visible binding for '<<-' assignment to ‘fileExprs’
openFile: no visible global function definition for ‘tkentry’
openFile: no visible binding for global variable ‘fileDose’
openFile: no visible binding for global variable ‘fileExprs’
openFile: no visible global function definition for ‘tklabel’
openFile: no visible global function definition for ‘tkgrid’
openFile : OnOK: no visible binding for '<<-' assignment to ‘exprs’
openFile : OnOK: no visible binding for global variable ‘exprs’
openFile : OnOK: no visible global function definition for ‘tkdelete’
openFile : OnOK: no visible binding for global variable ‘treeWidget’
openFile : OnOK: no visible global function definition for ‘tkinsert’
openFile : OnOK: no visible global function definition for
‘tkgrab.release’
openFile : OnOK: no visible global function definition for ‘tkdestroy’
openFile : onCancel: no visible binding for '<<-' assignment to
‘ReturnVal’
openFile : onCancel: no visible global function definition for
‘tkgrab.release’
openFile : onCancel: no visible global function definition for
‘tkdestroy’
openFile : onCancel: no visible global function definition for
‘tkwm.deiconify’
openFile : onCancel: no visible binding for global variable ‘tt’
openFile : onCancel: no visible global function definition for
‘tkfocus’
orQAE2: no visible global function definition for ‘tkmessageBox’
orQAE2: no visible global function definition for ‘tclvalue’
orQAE2: no visible global function definition for ‘tkfocus’
orQAE2: no visible binding for global variable ‘tt’
orQAE2: no visible global function definition for ‘tktoplevel’
orQAE2: no visible global function definition for ‘tkwm.title’
orQAE2: no visible global function definition for ‘tkframe’
orQAE2: no visible global function definition for ‘tkradiobutton’
orQAE2: no visible global function definition for ‘tclVar’
orQAE2: no visible global function definition for ‘tkconfigure’
orQAE2: no visible global function definition for ‘tkentry’
orQAE2: no visible binding for global variable ‘exprs’
orQAE2 : Calc.orQA: no visible global function definition for
‘tkmessageBox’
orQAE2 : Calc.orQA: no visible global function definition for
‘tclvalue’
orQAE2 : Calc.orQA: no visible global function definition for ‘tkfocus’
orQAE2 : Calc.orQA: no visible global function definition for
‘tkconfigure’
orQAE2 : Calc.orQA: no visible binding for global variable ‘exprs’
orQAE2 : Calc.orQA: no visible binding for global variable ‘dose’
orQAE2 : Calc.orQA: no visible binding for '<<-' assignment to
‘res.orQA’
orQAE2 : Calc.orQA: no visible binding for '<<-' assignment to
‘pval.orQA’
orQAE2 : Calc.orQA: no visible binding for global variable ‘res.orQA’
orQAE2 : Calc.orQA: no visible binding for '<<-' assignment to
‘ProbeID’
orQAE2 : Calc.orQA: no visible binding for '<<-' assignment to
‘Mu.Diff’
orQAE2 : Calc.orQA: no visible binding for global variable ‘ProbeID’
orQAE2 : Calc.orQA: no visible global function definition for
‘tkdelete’
orQAE2 : Calc.orQA: no visible binding for global variable ‘treeWidget’
orQAE2 : Calc.orQA: no visible global function definition for
‘tkinsert’
orQAE2: no visible global function definition for ‘tkbutton’
orQAE2: no visible global function definition for ‘tklabel’
orQAE2: no visible global function definition for ‘tkgrid.configure’
orQAE2: no visible global function definition for ‘tkgrid’
orQAE2: no visible global function definition for ‘tkcheckbutton’
orQAE2 : AdjustBut: no visible global function definition for
‘tkmessageBox’
orQAE2 : AdjustBut: no visible global function definition for
‘tclvalue’
orQAE2 : AdjustBut: no visible global function definition for ‘tkfocus’
orQAE2 : AdjustBut: no visible global function definition for
‘tkconfigure’
orQAE2 : AdjustBut: no visible binding for global variable ‘pval.orQA’
orQAE2 : AdjustBut: no visible binding for '<<-' assignment to ‘FDRval’
orQAE2 : AdjustBut: no visible binding for global variable ‘res.orQA’
orQAE2 : AdjustBut: no visible global function definition for
‘tkdelete’
orQAE2 : AdjustBut: no visible binding for global variable ‘treeWidget’
orQAE2 : AdjustBut: no visible global function definition for
‘tkinsert’
orQAE2 : AdjustBut: no visible binding for global variable ‘FDRval’
orQAE2 : AdjustBut: no visible binding for global variable ‘exprs2orqa’
orQAE2 : AdjustBut: no visible binding for '<<-' assignment to
‘Res.orQA’
orQAE2 : AdjustBut: no visible binding for global variable ‘ProbeID’
orQAE2 : AdjustBut: no visible binding for global variable ‘Mu.Diff’
orQAE2 : AdjustBut: no visible binding for global variable ‘Res.orQA’
orQAE2 : AdjustBut: no visible binding for '<<-' assignment to
‘SigGenes.orqaE2’
orQAE2 : AdjustBut: no visible binding for '<<-' assignment to
‘result3’
orQAE2 : AdjustBut: no visible binding for global variable ‘result3’
orQAE2 : savesiggene: no visible binding for global variable
‘SigGenes.orqaE2’
orQAE2 : saveallgene: no visible binding for '<<-' assignment to
‘Pval.AllGenes.orQA’
orQAE2 : saveallgene: no visible binding for global variable ‘Res.orQA’
orQAE2 : saveallgene: no visible binding for global variable
‘Pval.AllGenes.orQA’
orQAE2 : PlotBut: no visible global function definition for
‘tkmessageBox’
orQAE2 : PlotBut: no visible global function definition for ‘tclvalue’
orQAE2 : PlotBut: no visible global function definition for ‘tkfocus’
orQAE2 : PlotBut: no visible global function definition for
‘tkconfigure’
orQAE2 : PlotBut : rankPlot: no visible binding for global variable
‘exprs2orqa’
orQAE2 : PlotBut : rankPlot: no visible binding for global variable
‘pval.orQA’
orQAE2 : PlotBut : rankPlot: no visible binding for global variable
‘adjpBHorqa’
orQAE2 : PlotBut : rankPlot: no visible binding for global variable
‘adjpBYorqa’
orQAE2 : PlotBut : rankPlot: no visible binding for global variable
‘adjpSSorqa’
orQAE2 : PlotBut : rankPlot: no visible binding for global variable
‘adjpSDorqa’
orQAE2 : PlotBut : rankPlot: no visible binding for global variable
‘adjpHolmorqa’
orQAE2 : PlotBut : rankPlot: no visible binding for global variable
‘adjpHochorqa’
orQAE2 : PlotBut : rankPlot: no visible binding for global variable
‘adjpBonorqa’
orQAE2 : PlotBut : rankPlot: no visible binding for global variable
‘FDRval’
orQAE2 : PlotBut : rankPlot: no visible binding for global variable
‘result3’
orQAE2 : PlotBut : PVALSvsDiffPlot: no visible binding for global
variable ‘Mu.Diff’
orQAE2 : PlotBut : PVALSvsDiffPlot: no visible binding for global
variable ‘pval.orQA’
orQAE2 : onExit: no visible global function definition for ‘tkdestroy’
plotORCME: no visible global function definition for ‘tkmessageBox’
plotORCME: no visible global function definition for ‘tclvalue’
plotORCME: no visible global function definition for ‘tkfocus’
plotORCME: no visible binding for global variable ‘tt’
plotORCME: no visible global function definition for ‘tktoplevel’
plotORCME: no visible global function definition for ‘tkwm.deiconify’
plotORCME: no visible global function definition for ‘tkwm.title’
plotORCME: no visible global function definition for ‘tkframe’
plotORCME: no visible global function definition for ‘tkradiobutton’
plotORCME: no visible global function definition for ‘tclVar’
plotORCME: no visible global function definition for ‘tkconfigure’
plotORCME: no visible global function definition for ‘tkentry’
plotORCME: no visible global function definition for ‘tkgrid’
plotORCME: no visible global function definition for ‘tklabel’
plotORCME: no visible binding for global variable ‘nClusters’
plotORCME: no visible global function definition for ‘tkgrid.configure’
plotORCME: no visible global function definition for ‘tkcheckbutton’
plotORCME: no visible binding for global variable ‘dose’
plotORCME : OnOK: no visible global function definition for ‘tkdestroy’
plotORCME : OnOK: no visible global function definition for ‘tclvalue’
plotORCME : OnOK : plotClusters: no visible binding for global variable
‘clusteringData’
plotORCME : OnOK : plotClusters: no visible binding for global variable
‘ORCMEoutput’
plotORCME : onCancel: no visible global function definition for
‘tkgrab.release’
plotORCME : onCancel: no visible global function definition for
‘tkdestroy’
plotORCME : onCancel: no visible global function definition for
‘tkwm.deiconify’
plotORCME : onCancel: no visible binding for global variable ‘tt’
plotORCME : onCancel: no visible global function definition for
‘tkfocus’
plotORCME: no visible global function definition for ‘tkbutton’
printExact: no visible global function definition for ‘tktoplevel’
printExact: no visible global function definition for ‘tkwm.title’
printExact: no visible global function definition for ‘tkscrollbar’
printExact : <anonymous>: no visible global function definition for
‘tkxview’
printExact : <anonymous>: no visible global function definition for
‘tkyview’
printExact: no visible global function definition for ‘tktext’
printExact : <anonymous>: no visible global function definition for
‘tkset’
printExact: no visible global function definition for ‘tkgrid’
printExact: no visible global function definition for
‘tkgrid.configure’
printExact: no visible global function definition for ‘tkinsert’
printExact: no visible global function definition for ‘tkconfigure’
printExact: no visible global function definition for ‘tkfocus’
printExact: no visible global function definition for ‘tkwm.deiconify’
printOrQA: no visible global function definition for ‘tktoplevel’
printOrQA: no visible global function definition for ‘tkwm.title’
printOrQA: no visible global function definition for ‘tkscrollbar’
printOrQA : <anonymous>: no visible global function definition for
‘tkxview’
printOrQA : <anonymous>: no visible global function definition for
‘tkyview’
printOrQA: no visible global function definition for ‘tktext’
printOrQA : <anonymous>: no visible global function definition for
‘tkset’
printOrQA: no visible global function definition for ‘tkgrid’
printOrQA: no visible global function definition for ‘tkgrid.configure’
printOrQA: no visible global function definition for ‘tkinsert’
printOrQA: no visible global function definition for ‘tkconfigure’
printOrQA: no visible global function definition for ‘tkfocus’
printOrQA: no visible global function definition for ‘tkwm.deiconify’
printsummary: no visible global function definition for ‘tktoplevel’
printsummary: no visible global function definition for ‘tkwm.title’
printsummary: no visible global function definition for ‘tkscrollbar’
printsummary : <anonymous>: no visible global function definition for
‘tkxview’
printsummary : <anonymous>: no visible global function definition for
‘tkyview’
printsummary: no visible global function definition for ‘tktext’
printsummary : <anonymous>: no visible global function definition for
‘tkset’
printsummary: no visible global function definition for ‘tkgrid’
printsummary: no visible global function definition for
‘tkgrid.configure’
printsummary: no visible global function definition for ‘tkinsert’
printsummary: no visible global function definition for ‘tkconfigure’
printsummary: no visible global function definition for ‘tkfocus’
samplot2: no visible binding for global variable ‘SAMRes’
samplot2: no visible binding for global variable ‘statSAMplot’
samplot2: no visible binding for global variable ‘Delta.table’
samplot2: no visible binding for global variable ‘pos’
save.result: no visible global function definition for ‘tktoplevel’
save.result: no visible global function definition for ‘tkwm.title’
save.result: no visible global function definition for ‘tkframe’
save.result: no visible global function definition for ‘tklabel’
save.result: no visible global function definition for ‘tkcheckbutton’
save.result: no visible global function definition for ‘tclVar’
save.result: no visible global function definition for ‘tkconfigure’
save.result: no visible binding for '<<-' assignment to ‘fileXls’
save.result: no visible global function definition for ‘tkbutton’
save.result: no visible global function definition for ‘tkentry’
save.result: no visible binding for global variable ‘fileXls’
save.result: no visible binding for '<<-' assignment to ‘SavefileName’
save.result: no visible binding for global variable ‘SavefileName’
save.result: no visible global function definition for
‘tkgrid.configure’
save.result: no visible global function definition for ‘tkgrid’
save.result : saveSigGene: no visible global function definition for
‘tclvalue’
save.result : saveSigGene: no visible global function definition for
‘tkmessageBox’
save.result : saveSigGene: no visible binding for global variable
‘fileXls2’
save.result : saveSigGene: no visible binding for global variable
‘fileRwd’
save.result : saveSigGene: no visible global function definition for
‘tkdestroy’
save.result : cancel.ok: no visible global function definition for
‘tkdestroy’
save.result.ORCME: no visible global function definition for
‘tktoplevel’
save.result.ORCME: no visible global function definition for
‘tkwm.title’
save.result.ORCME: no visible global function definition for ‘tkframe’
save.result.ORCME: no visible global function definition for ‘tklabel’
save.result.ORCME: no visible global function definition for
‘tkcheckbutton’
save.result.ORCME: no visible global function definition for ‘tclVar’
save.result.ORCME: no visible global function definition for
‘tkconfigure’
save.result.ORCME: no visible binding for '<<-' assignment to ‘fileXls’
save.result.ORCME: no visible global function definition for ‘tkbutton’
save.result.ORCME: no visible global function definition for ‘tkentry’
save.result.ORCME: no visible binding for global variable ‘fileXls’
save.result.ORCME: no visible binding for '<<-' assignment to
‘SavefileName’
save.result.ORCME: no visible binding for global variable
‘SavefileName’
save.result.ORCME: no visible global function definition for
‘tkgrid.configure’
save.result.ORCME: no visible global function definition for ‘tkgrid’
save.result.ORCME : saveSigGene: no visible global function definition
for ‘tclvalue’
save.result.ORCME : saveSigGene: no visible global function definition
for ‘tkmessageBox’
save.result.ORCME : saveSigGene: no visible binding for global variable
‘fileXls2’
save.result.ORCME : saveSigGene: no visible binding for global variable
‘fileRwd’
save.result.ORCME : saveSigGene: no visible global function definition
for ‘tkdestroy’
save.result.ORCME : cancel.ok: no visible global function definition
for ‘tkdestroy’
save.result.ORICC: no visible global function definition for
‘tktoplevel’
save.result.ORICC: no visible global function definition for
‘tkwm.title’
save.result.ORICC: no visible global function definition for ‘tkframe’
save.result.ORICC: no visible global function definition for ‘tklabel’
save.result.ORICC: no visible global function definition for ‘tkbutton’
save.result.ORICC: no visible binding for '<<-' assignment to
‘SavefileName’
save.result.ORICC: no visible global function definition for ‘tclVar’
save.result.ORICC: no visible global function definition for ‘tkentry’
save.result.ORICC: no visible binding for global variable
‘SavefileName’
save.result.ORICC: no visible global function definition for
‘tkgrid.configure’
save.result.ORICC: no visible global function definition for ‘tkgrid’
save.result.ORICC : saveSigGene: no visible binding for global variable
‘fileRwd’
save.result.ORICC : saveSigGene: no visible global function definition
for ‘tkmessageBox’
save.result.ORICC : saveSigGene: no visible global function definition
for ‘tkdestroy’
save.result.ORICC : cancel.ok: no visible global function definition
for ‘tkdestroy’
save.result.mult: no visible global function definition for
‘tktoplevel’
save.result.mult: no visible global function definition for
‘tkwm.title’
save.result.mult: no visible global function definition for ‘tkframe’
save.result.mult: no visible global function definition for ‘tklabel’
save.result.mult: no visible global function definition for
‘tkcheckbutton’
save.result.mult: no visible global function definition for ‘tclVar’
save.result.mult: no visible global function definition for
‘tkconfigure’
save.result.mult: no visible binding for '<<-' assignment to
‘SaveDirName’
save.result.mult: no visible global function definition for ‘tkbutton’
save.result.mult: no visible global function definition for ‘tkentry’
save.result.mult: no visible binding for global variable ‘SaveDirName’
save.result.mult: no visible binding for '<<-' assignment to
‘SavefileName’
save.result.mult: no visible binding for global variable ‘SavefileName’
save.result.mult: no visible global function definition for
‘tkgrid.configure’
save.result.mult: no visible global function definition for ‘tkgrid’
save.result.mult : saveSigGenes: no visible global function definition
for ‘tclvalue’
save.result.mult : saveSigGenes: no visible global function definition
for ‘tkmessageBox’
save.result.mult : saveSigGenes: no visible binding for global variable
‘DirName’
save.result.mult : saveSigGenes: no visible binding for global variable
‘fileRwd’
save.result.mult : saveSigGenes: no visible global function definition
for ‘tkdestroy’
save.result.mult : cancel.ok: no visible global function definition for
‘tkdestroy’
saveDir: no visible global function definition for ‘tclvalue’
saveDir: no visible global function definition for ‘tkchooseDirectory’
saveDir: no visible binding for '<<-' assignment to ‘SaveDirName’
saveDir: no visible binding for global variable ‘SaveDirName’
saveDir: no visible global function definition for ‘tclvalue<-’
saveDir: no visible global function definition for ‘tkmessageBox’
saveXls: no visible global function definition for ‘tclvalue’
saveXls: no visible global function definition for ‘tkgetSaveFile’
saveXls: no visible binding for '<<-' assignment to ‘fileXls2’
saveXls: no visible binding for global variable ‘fileXls’
saveXls: no visible binding for '<<-' assignment to ‘fileXls’
saveXls: no visible global function definition for ‘tclvalue<-’
saveXls: no visible binding for global variable ‘fileXls2’
saveXls: no visible global function definition for ‘tkmessageBox’
savingRwd: no visible global function definition for ‘tclvalue’
savingRwd: no visible global function definition for ‘tkgetSaveFile’
savingRwd: no visible binding for '<<-' assignment to ‘SavefileName’
savingRwd: no visible binding for global variable ‘SavefileName’
savingRwd: no visible global function definition for ‘tclvalue<-’
savingRwd: no visible global function definition for ‘tkmessageBox’
showdata: no visible global function definition for ‘tkmessageBox’
showdata: no visible global function definition for ‘tclvalue’
showdata: no visible global function definition for ‘tkfocus’
showdata: no visible binding for global variable ‘tt’
showdata: no visible global function definition for ‘tktoplevel’
showdata: no visible global function definition for ‘tkwm.deiconify’
showdata: no visible global function definition for ‘tkwm.title’
showdata: no visible global function definition for ‘tkframe’
showdata: no visible global function definition for ‘tkgrab.set’
showdata: no visible global function definition for ‘tkscrollbar’
showdata : <anonymous>: no visible global function definition for
‘tkyview’
showdata: no visible global function definition for ‘tklistbox’
showdata : <anonymous>: no visible global function definition for
‘tkset’
showdata: no visible global function definition for ‘tkgrid’
showdata: no visible global function definition for ‘tklabel’
showdata: no visible global function definition for ‘tkgrid.configure’
showdata: no visible binding for global variable ‘dataSet’
showdata: no visible global function definition for ‘tkinsert’
showdata: no visible global function definition for ‘tkselection.set’
showdata : OnOK: no visible global function definition for
‘tkcurselection’
showdata : OnOK: no visible global function definition for ‘tkdestroy’
showdata : OnOK: no visible binding for global variable ‘dose’
showdata : OnOK: no visible binding for global variable ‘exprs’
showdata : onCancel: no visible global function definition for
‘tkgrab.release’
showdata : onCancel: no visible global function definition for
‘tkdestroy’
showdata : onCancel: no visible global function definition for
‘tkwm.deiconify’
showdata : onCancel: no visible binding for global variable ‘tt’
showdata : onCancel: no visible global function definition for
‘tkfocus’
showdata: no visible global function definition for ‘tkbutton’
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [9s/9s] OK
* checking for unstated dependencies in tests ... OK
* checking tests ...
Running ‘isogenegui_unit_tests.R’ [9s/9s]
[9s/9s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
NOTE: There were 2 notes.
See
‘/home/biocbuild/bbs-3.0-bioc/meat/IsoGeneGUI.Rcheck/00check.log’
for details.