BioC 3.0: CHECK report for IMPCdata on zin1

Package: IMPCdata

Version: 1.0.0

Command: /home/biocbuild/bbs-3.0-bioc/R/bin/R CMD check --no-vignettes --timings IMPCdata_1.0.0.tar.gz

StartedAt: 2015-04-10 01:12:37 -0700 (Fri, 10 Apr 2015)

EndedAt: 2015-04-10 01:15:53 -0700 (Fri, 10 Apr 2015)

EllapsedTime: 195.9 seconds

RetCode: 0

Status:  OK

CheckDir: IMPCdata.Rcheck

Warnings: 0

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.0-bioc/R/bin/R CMD check --no-vignettes --timings IMPCdata_1.0.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.0-bioc/meat/IMPCdata.Rcheck’
* using R version 3.1.3 (2015-03-09)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘IMPCdata/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘IMPCdata’ version ‘1.0.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘IMPCdata’ can be installed ... [1s/1s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [1s/185s] OK
Examples with CPU or elapsed time > 5s
                  user system elapsed
getAlleles       0.128  0.024  32.230
printAlleles     0.120  0.028  32.687
getGenes         0.120  0.024  32.111
printGenes       0.096  0.040  32.237
getParameters    0.036  0.004   8.457
printParameters  0.032  0.000   8.160
printProcedures  0.024  0.008   7.008
getProcedures    0.024  0.004   7.390
printPhenCenters 0.020  0.000   8.728
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

* installing *source* package ‘IMPCdata’ ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (IMPCdata)

name	user	system	elapsed
getAlleles	0.128	0.024	32.230
getGenes	0.120	0.024	32.111
getIMPCDataset	0.168	0.004	2.873
getIMPCTable	0.004	0.004	1.304
getName	0.004	0.000	0.349
getParameters	0.036	0.004	8.457
getPhenCenters	0.012	0.000	4.692
getPipelines	0.000	0.000	0.814
getProcedures	0.024	0.004	7.390
getStrains	0.032	0.000	2.460
getZygosities	0.000	0.004	0.316
printAlleles	0.120	0.028	32.687
printGenes	0.096	0.040	32.237
printParameters	0.032	0.000	8.160
printPhenCenters	0.020	0.000	8.728
printPipelines	0.000	0.000	0.763
printProcedures	0.024	0.008	7.008
printStrains	0.004	0.004	2.024