BioC 3.0: CHECK report for supraHex on zin1

Package: supraHex

Version: 1.4.0

Command: /home/biocbuild/bbs-3.0-bioc/R/bin/R CMD check --no-vignettes --timings supraHex_1.4.0.tar.gz

StartedAt: 2015-04-10 04:47:11 -0700 (Fri, 10 Apr 2015)

EndedAt: 2015-04-10 04:47:51 -0700 (Fri, 10 Apr 2015)

EllapsedTime: 40.0 seconds

RetCode: 0

Status:  OK

CheckDir: supraHex.Rcheck

Warnings: 0

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### Running command:
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###   /home/biocbuild/bbs-3.0-bioc/R/bin/R CMD check --no-vignettes --timings supraHex_1.4.0.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.0-bioc/meat/supraHex.Rcheck’
* using R version 3.1.3 (2015-03-09)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘supraHex/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘supraHex’ version ‘1.4.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘supraHex’ can be installed ... [2s/2s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [11s/11s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

* installing *source* package ‘supraHex’ ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (supraHex)

name	user	system	elapsed
sBMH	0.084	0.004	0.089
sCompReorder	1.080	0.000	1.081
sDistance	0.084	0.004	0.089
sDmat	0.140	0.000	0.144
sDmatCluster	0.184	0.000	0.188
sDmatMinima	0.120	0.000	0.119
sHexDist	0.004	0.000	0.004
sHexGrid	0.004	0.000	0.003
sInitial	0.008	0.000	0.005
sMapOverlay	0.196	0.000	0.196
sNeighAny	0.008	0.000	0.008
sNeighDirect	0.008	0.000	0.007
sPipeline	0.316	0.000	0.316
sTopology	0.016	0.000	0.019
sTrainBatch	0.040	0.000	0.043
sTrainSeq	0.792	0.000	0.795
sTrainology	0.004	0.000	0.005
sWriteData	0.176	0.000	0.173
visColoralpha	0.008	0.000	0.007
visColorbar	0.048	0.000	0.048
visColormap	0.008	0.000	0.006
visCompReorder	1.208	0.012	1.221
visDmatCluster	0.276	0.004	0.283
visDmatHeatmap	0.188	0.000	0.191
visHeatmap	0.108	0.000	0.110
visHeatmapAdv	0.548	0.000	0.550
visHexComp	0.124	0.000	0.127
visHexGrid	0.112	0.000	0.112
visHexMapping	1.508	0.012	1.526
visHexMulComp	0.776	0.004	0.779
visHexPattern	1.296	0.000	1.352
visKernels	0.008	0.004	0.021
visTreeBootstrap	0.216	0.000	0.217
visVp	0.032	0.000	0.029