rSFFreader 0.14.0
Matt Settles
| Snapshot Date: 2015-04-09 16:20:12 -0700 (Thu, 09 Apr 2015) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_0/madman/Rpacks/rSFFreader | | Last Changed Rev: 95439 / Revision: 102249 | | Last Changed Date: 2014-10-13 14:38:33 -0700 (Mon, 13 Oct 2014) |
| zin1 | Linux (Ubuntu 12.04.4 LTS) / x86_64 | OK | OK | OK | |
| moscato1 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | [ ERROR ] | skipped | skipped |
| perceval | Mac OS X Snow Leopard (10.6.8) / x86_64 | OK | OK | OK | OK |
| oaxaca | Mac OS X Mavericks (10.9.5) / x86_64 | OK | OK | OK | OK |
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### Running command:
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### chmod a+r rSFFreader -R && D:\biocbld\bbs-3.0-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data rSFFreader
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* checking for file 'rSFFreader/DESCRIPTION' ... OK
* preparing 'rSFFreader':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ...Warning: running command '"D:/biocbld/bbs-3.0-bioc/R/bin/i386/Rscript" --vanilla --default-packages= -e "tools::buildVignettes(dir = '.', tangle = TRUE)"' had status 1
ERROR
Loading required package: ShortRead
Loading required package: BiocGenerics
Loading required package: parallel
Attaching package: 'BiocGenerics'
The following objects are masked from 'package:parallel':
clusterApply, clusterApplyLB, clusterCall,
clusterEvalQ, clusterExport, clusterMap,
parApply, parCapply, parLapply, parLapplyLB,
parRapply, parSapply, parSapplyLB
The following object is masked from 'package:stats':
xtabs
The following objects are masked from 'package:base':
Filter, Find, Map, Position, Reduce,
anyDuplicated, append, as.data.frame, as.vector,
cbind, colnames, do.call, duplicated, eval,
evalq, get, intersect, is.unsorted, lapply,
mapply, match, mget, order, paste, pmax,
pmax.int, pmin, pmin.int, rank, rbind, rep.int,
rownames, sapply, setdiff, sort, table, tapply,
union, unique, unlist, unsplit
Loading required package: BiocParallel
Loading required package: Biostrings
Loading required package: S4Vectors
Loading required package: stats4
Loading required package: IRanges
Loading required package: XVector
Loading required package: Rsamtools
Loading required package: GenomeInfoDb
Loading required package: GenomicRanges
Loading required package: GenomicAlignments
Warning in readSff(system.file("extdata", "Small454Test.sff", package = "rSFFreader")) :
Reached total allocation of 3583Mb: see help(memory.size)
Warning in readSff(system.file("extdata", "Small454Test.sff", package = "rSFFreader")) :
Reached total allocation of 3583Mb: see help(memory.size)
Warning in readSff(system.file("extdata", "Small454Test.sff", package = "rSFFreader")) :
Reached total allocation of 3583Mb: see help(memory.size)
Warning in readSff(system.file("extdata", "Small454Test.sff", package = "rSFFreader")) :
Reached total allocation of 3583Mb: see help(memory.size)
Error: processing vignette 'rSFFreader.Rnw' failed with diagnostics:
chunk 3 (label = Reads454)
Error : cannot allocate vector of size 912.3 Mb
Execution halted