BioC 3.0: BUILD BIN report for qpgraph on oaxaca

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### Running command:
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###   rm -rf qpgraph.buildbin-libdir && mkdir qpgraph.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh qpgraph_2.0.5.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R qpgraph.buildbin-libdir
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>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=qpgraph.buildbin-libdir qpgraph_2.0.5.tar.gz'
>>>>>>> 

* installing *source* package ‘qpgraph’ ...
checking for gcc... gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ANSI C... none needed
checking build system type... i686-apple-darwin13.1.0
checking host system type... i686-apple-darwin13.1.0
configure: creating ./config.status
config.status: creating src/Makevars
** libs
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include   -Wall -mtune=core2 -g -O2 -Wall -pedantic -fPIC  -Wall -mtune=core2 -g -O2  -c cliquer.c -o cliquer.o
cliquer.c:229:5: warning: implicit declaration of function 'R_ProcessEvents' is invalid in C99 [-Wimplicit-function-declaration]
    R_ProcessEvents();
    ^
cliquer.c:1802:8: warning: unused variable 'fp' [-Wunused-variable]
        FILE *fp=opts->output;
              ^
cliquer.c:1851:8: warning: unused variable 'fp' [-Wunused-variable]
        FILE *fp=opts->output;
              ^
3 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include   -Wall -mtune=core2 -g -O2 -Wall -pedantic -fPIC  -Wall -mtune=core2 -g -O2  -c graph.c -o graph.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include   -Wall -mtune=core2 -g -O2 -Wall -pedantic -fPIC  -Wall -mtune=core2 -g -O2  -c qpgraph.c -o qpgraph.o
qpgraph.c:4247:15: warning: unused variable 'i' [-Wunused-variable]
  int         i,j,k;
              ^
qpgraph.c:4247:17: warning: unused variable 'j' [-Wunused-variable]
  int         i,j,k;
                ^
qpgraph.c:4247:19: warning: unused variable 'k' [-Wunused-variable]
  int         i,j,k;
                  ^
qpgraph.c:4289:15: warning: unused variable 'Y_j' [-Wunused-variable]
  int*        Y_j = NULL;
              ^
qpgraph.c:8012:17: warning: unused variable 'm' [-Wunused-variable]
  int     i,j,k,m;
                ^
qpgraph.c:8012:15: warning: unused variable 'k' [-Wunused-variable]
  int     i,j,k,m;
              ^
qpgraph.c:8141:5: warning: incompatible pointer types assigning to 'Rboolean *' from 'int *' [-Wincompatible-pointer-types]
  G = LOGICAL(GR);
    ^ ˜˜˜˜˜˜˜˜˜˜˜
7 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include   -Wall -mtune=core2 -g -O2 -Wall -pedantic -fPIC  -Wall -mtune=core2 -g -O2  -c reorder.c -o reorder.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o qpgraph.so cliquer.o graph.o qpgraph.o reorder.o -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/usr/local/lib/gcc/x86_64-apple-darwin13.0.0/4.8.2 -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.0-bioc/meat/qpgraph.buildbin-libdir/qpgraph/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** preparing package for lazy loading
Creating a generic function from function ‘rmvnorm’ in package ‘qpgraph’
Creating a generic function from function ‘sim.cross’ in package ‘qpgraph’
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (qpgraph)


>>>>>>> 
>>>>>>> FIXING LINKS FOR qpgraph.buildbin-libdir/qpgraph/libs//qpgraph.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.1/Resources/lib/libgcc_s.1.dylib" "qpgraph.buildbin-libdir/qpgraph/libs//qpgraph.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.1/Resources/lib/libgfortran.3.dylib" "qpgraph.buildbin-libdir/qpgraph/libs//qpgraph.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.1/Resources/lib/libreadline.5.2.dylib" "qpgraph.buildbin-libdir/qpgraph/libs//qpgraph.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.1/Resources/lib/libreadline.dylib" "qpgraph.buildbin-libdir/qpgraph/libs//qpgraph.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.1/Resources/lib/libquadmath.0.dylib" "qpgraph.buildbin-libdir/qpgraph/libs//qpgraph.so"
BioC 3.0: BUILD BIN report for qpgraph on oaxaca

Summary

Command output
