openCyto 1.4.0
Mike Jiang
| Snapshot Date: 2015-04-09 16:20:12 -0700 (Thu, 09 Apr 2015) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_0/madman/Rpacks/openCyto | | Last Changed Rev: 95439 / Revision: 102249 | | Last Changed Date: 2014-10-13 14:38:33 -0700 (Mon, 13 Oct 2014) |
| zin1 | Linux (Ubuntu 12.04.4 LTS) / x86_64 | OK | OK | OK | |
| moscato1 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | [ OK ] | OK | OK | OK |
| perceval | Mac OS X Snow Leopard (10.6.8) / x86_64 | OK | OK | OK | OK |
| oaxaca | Mac OS X Mavericks (10.9.5) / x86_64 | OK | OK | OK | OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://zin1/BBS/3.0/bioc/src/contrib/openCyto_1.4.0.tar.gz && D:\biocbld\bbs-3.0-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch openCyto_1.4.0.tar.gz && rm openCyto_1.4.0.tar.gz
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
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100 103k 100 103k 0 0 3149k 0 --:--:-- --:--:-- --:--:-- 3815k
install for i386
* installing to library 'D:/biocbld/bbs-3.0-bioc/R/library'
* installing *source* package 'openCyto' ...
** libs
g++ -m32 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -I"D:/biocbld/bbs-3.0-bioc/R/library/Rcpp/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -mtune=core2 -c RcppExports.cpp -o RcppExports.o
g++ -m32 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -I"D:/biocbld/bbs-3.0-bioc/R/library/Rcpp/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -mtune=core2 -c misc.cpp -o misc.o
misc.cpp: In function 'Rcpp::NumericMatrix collapseData(Rcpp::List, Rcpp::StringVector)':
misc.cpp:10:40: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
misc.cpp:21:47: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
gcc -m32 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -I"D:/biocbld/bbs-3.0-bioc/R/library/Rcpp/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O3 -Wall -std=gnu99 -mtune=core2 -c unlockNamespace.c -o unlockNamespace.o
g++ -m32 -shared -s -static-libgcc -o openCyto.dll tmp.def RcppExports.o misc.o unlockNamespace.o -Ld:/RCompile/CRANpkg/extralibs64/local/lib/i386 -Ld:/RCompile/CRANpkg/extralibs64/local/lib -LD:/biocbld/BBS-3˜1.0-B/R/bin/i386 -lR
installing to D:/biocbld/bbs-3.0-bioc/R/library/openCyto/libs/i386
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
'HowToWriteCSVTemplate.Rmd'
'openCytoVignette.Rmd'
** testing if installed package can be loaded
install for x64
* installing to library 'D:/biocbld/bbs-3.0-bioc/R/library'
* installing *source* package 'openCyto' ...
** libs
g++ -m64 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -I"D:/biocbld/bbs-3.0-bioc/R/library/Rcpp/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -mtune=core2 -c RcppExports.cpp -o RcppExports.o
g++ -m64 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -I"D:/biocbld/bbs-3.0-bioc/R/library/Rcpp/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -mtune=core2 -c misc.cpp -o misc.o
misc.cpp: In function 'Rcpp::NumericMatrix collapseData(Rcpp::List, Rcpp::StringVector)':
misc.cpp:10:40: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
misc.cpp:21:47: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
gcc -m64 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -I"D:/biocbld/bbs-3.0-bioc/R/library/Rcpp/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -std=gnu99 -mtune=core2 -c unlockNamespace.c -o unlockNamespace.o
g++ -m64 -shared -s -static-libgcc -o openCyto.dll tmp.def RcppExports.o misc.o unlockNamespace.o -Ld:/RCompile/CRANpkg/extralibs64/local/lib/x64 -Ld:/RCompile/CRANpkg/extralibs64/local/lib -LD:/biocbld/BBS-3˜1.0-B/R/bin/x64 -lR
installing to D:/biocbld/bbs-3.0-bioc/R/library/openCyto/libs/x64
** testing if installed package can be loaded
* DONE (openCyto)