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BioC 3.0: INSTALL report for metagenomeSeq on moscato1

This page was generated on 2015-04-10 09:48:48 -0700 (Fri, 10 Apr 2015).

Package 534/933HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
metagenomeSeq 1.8.3
Joseph N. Paulson
Snapshot Date: 2015-04-09 16:20:12 -0700 (Thu, 09 Apr 2015)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_0/madman/Rpacks/metagenomeSeq
Last Changed Rev: 97784 / Revision: 102249
Last Changed Date: 2014-12-18 15:16:55 -0800 (Thu, 18 Dec 2014)
zin1 Linux (Ubuntu 12.04.4 LTS) / x86_64  OK  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 [ OK ] OK  OK  OK 
perceval Mac OS X Snow Leopard (10.6.8) / x86_64  OK  OK  OK  OK 
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  OK  OK 

Summary

Package: metagenomeSeq
Version: 1.8.3
Command: C:\cygwin\bin\curl.exe -O http://zin1/BBS/3.0/bioc/src/contrib/metagenomeSeq_1.8.3.tar.gz && D:\biocbld\bbs-3.0-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch metagenomeSeq_1.8.3.tar.gz && rm metagenomeSeq_1.8.3.tar.gz
StartedAt: 2015-04-09 18:16:11 -0700 (Thu, 09 Apr 2015)
EndedAt: 2015-04-09 18:17:53 -0700 (Thu, 09 Apr 2015)
EllapsedTime: 101.9 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://zin1/BBS/3.0/bioc/src/contrib/metagenomeSeq_1.8.3.tar.gz && D:\biocbld\bbs-3.0-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch metagenomeSeq_1.8.3.tar.gz && rm metagenomeSeq_1.8.3.tar.gz
###
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100  817k  100  817k    0     0  47.0M      0 --:--:-- --:--:-- --:--:-- 88.7M

install for i386

* installing to library 'D:/biocbld/bbs-3.0-bioc/R/library'
* installing *source* package 'metagenomeSeq' ...
** R
** data
** inst
** preparing package for lazy loading
Note: the specification for S3 class "AsIs" in package 'RJSONIO' seems equivalent to one from package 'BiocGenerics': not turning on duplicate class definitions for this class.
Creating a generic function for 'colSums' from package 'base' in package 'metagenomeSeq'
Creating a generic function for 'rowSums' from package 'base' in package 'metagenomeSeq'
Creating a generic function for 'rowMeans' from package 'base' in package 'metagenomeSeq'
Creating a generic function for 'colMeans' from package 'base' in package 'metagenomeSeq'
** help
*** installing help indices
** building package indices
** installing vignettes
   'metagenomeSeq.Rnw' 
** testing if installed package can be loaded
Note: the specification for S3 class "AsIs" in package 'RJSONIO' seems equivalent to one from package 'BiocGenerics': not turning on duplicate class definitions for this class.

install for x64

* installing to library 'D:/biocbld/bbs-3.0-bioc/R/library'
* installing *source* package 'metagenomeSeq' ...
** testing if installed package can be loaded
Note: the specification for S3 class "AsIs" in package 'RJSONIO' seems equivalent to one from package 'BiocGenerics': not turning on duplicate class definitions for this class.
* DONE (metagenomeSeq)