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BioC 3.0: BUILD BIN report for illuminaio on oaxaca

This page was generated on 2015-04-10 10:06:34 -0700 (Fri, 10 Apr 2015).

Package 451/933HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
illuminaio 0.8.0
Kasper Daniel Hansen
Snapshot Date: 2015-04-09 16:20:12 -0700 (Thu, 09 Apr 2015)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_0/madman/Rpacks/illuminaio
Last Changed Rev: 95511 / Revision: 102249
Last Changed Date: 2014-10-14 16:17:59 -0700 (Tue, 14 Oct 2014)
zin1 Linux (Ubuntu 12.04.4 LTS) / x86_64  OK  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK  OK 
perceval Mac OS X Snow Leopard (10.6.8) / x86_64  OK  OK  OK  OK 
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  OK [ OK ]

Summary

Package: illuminaio
Version: 0.8.0
Command: rm -rf illuminaio.buildbin-libdir && mkdir illuminaio.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh illuminaio_0.8.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R illuminaio.buildbin-libdir
StartedAt: 2015-04-10 04:41:30 -0700 (Fri, 10 Apr 2015)
EndedAt: 2015-04-10 04:41:32 -0700 (Fri, 10 Apr 2015)
EllapsedTime: 2.0 seconds
RetCode: 0
Status:  OK 
PackageFile: illuminaio_0.8.0.tgz
PackageFileSize: 297 KiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf illuminaio.buildbin-libdir && mkdir illuminaio.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh illuminaio_0.8.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R illuminaio.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=illuminaio.buildbin-libdir illuminaio_0.8.0.tar.gz'
>>>>>>> 

* installing *source* package ‘illuminaio’ ...
** libs
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include    -fPIC  -Wall -mtune=core2 -g -O2  -c des.c -o des.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include    -fPIC  -Wall -mtune=core2 -g -O2  -c local_des.c -o local_des.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o illuminaio.so des.o local_des.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.0-bioc/meat/illuminaio.buildbin-libdir/illuminaio/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (illuminaio)


>>>>>>> 
>>>>>>> FIXING LINKS FOR illuminaio.buildbin-libdir/illuminaio/libs//illuminaio.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.1/Resources/lib/libgcc_s.1.dylib" "illuminaio.buildbin-libdir/illuminaio/libs//illuminaio.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.1/Resources/lib/libgfortran.3.dylib" "illuminaio.buildbin-libdir/illuminaio/libs//illuminaio.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.1/Resources/lib/libreadline.5.2.dylib" "illuminaio.buildbin-libdir/illuminaio/libs//illuminaio.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.1/Resources/lib/libreadline.dylib" "illuminaio.buildbin-libdir/illuminaio/libs//illuminaio.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.1/Resources/lib/libquadmath.0.dylib" "illuminaio.buildbin-libdir/illuminaio/libs//illuminaio.so"