iClusterPlus 1.2.0
Qianxing Mo , Ronglai Shen
| Snapshot Date: 2015-04-09 16:20:12 -0700 (Thu, 09 Apr 2015) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_0/madman/Rpacks/iClusterPlus | | Last Changed Rev: 95439 / Revision: 102249 | | Last Changed Date: 2014-10-13 14:38:33 -0700 (Mon, 13 Oct 2014) |
| zin1 | Linux (Ubuntu 12.04.4 LTS) / x86_64 | NotNeeded | OK | OK | |
| moscato1 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | NotNeeded | OK | OK | OK |
| perceval | Mac OS X Snow Leopard (10.6.8) / x86_64 | NotNeeded | OK | OK | [ OK ] |
| oaxaca | Mac OS X Mavericks (10.9.5) / x86_64 | NotNeeded | OK | WARNINGS | OK |
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### Running command:
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### rm -rf iClusterPlus.buildbin-libdir && mkdir iClusterPlus.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh iClusterPlus_1.2.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R iClusterPlus.buildbin-libdir
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>>>>>>>
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=iClusterPlus.buildbin-libdir iClusterPlus_1.2.0.tar.gz'
>>>>>>>
* installing *source* package ‘iClusterPlus’ ...
This package has only been tested with gfortran.
So some checks are needed.
R_HOME is /Library/Frameworks/R.framework/Resources
Attempting to determine R_ARCH...
R_ARCH is
Attempting to detect how R was configured for Fortran 90....
R configured for gfortran; Good!
configure: creating ./config.status
config.status: creating src/Makevars
** libs
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -mtune=core2 -g -O2 -Wall -c iClusterPlus.c -o iClusterPlus.o
gfortran-4.2 -arch x86_64 -fdefault-real-8 -ffixed-form -fno-common -g -O2 -c newGLMnet.f90 -o newGLMnet.o
gfortran-4.2 -arch x86_64 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -L/usr/local/lib -o iClusterPlus.so iClusterPlus.o newGLMnet.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/lib/gcc/i686-apple-darwin8/4.2.3/x86_64 -L/usr/local/lib/x86_64 -L/usr/local/lib/gcc/i686-apple-darwin8/4.2.3 -lgfortran -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.0-bioc/meat/iClusterPlus.buildbin-libdir/iClusterPlus/libs
** R
** data
*** moving datasets to lazyload DB
** demo
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (iClusterPlus)
>>>>>>>
>>>>>>> FIXING LINKS FOR iClusterPlus.buildbin-libdir/iClusterPlus/libs//iClusterPlus.so
>>>>>>>
install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.1/Resources/lib/libgcc_s.1.dylib" "iClusterPlus.buildbin-libdir/iClusterPlus/libs//iClusterPlus.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/3.1/Resources/lib/libgfortran.2.dylib" "iClusterPlus.buildbin-libdir/iClusterPlus/libs//iClusterPlus.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.1/Resources/lib/libreadline.5.2.dylib" "iClusterPlus.buildbin-libdir/iClusterPlus/libs//iClusterPlus.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.1/Resources/lib/libreadline.dylib" "iClusterPlus.buildbin-libdir/iClusterPlus/libs//iClusterPlus.so"