bigmemoryExtras 1.10.0
Peter M. Haverty
| Snapshot Date: 2015-04-09 16:20:12 -0700 (Thu, 09 Apr 2015) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_0/madman/Rpacks/bigmemoryExtras | | Last Changed Rev: 95439 / Revision: 102249 | | Last Changed Date: 2014-10-13 14:38:33 -0700 (Mon, 13 Oct 2014) |
| zin1 | Linux (Ubuntu 12.04.4 LTS) / x86_64 | NotNeeded | OK | OK | |
| moscato1 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | ...NOT SUPPORTED...NOT SUPPORTED...NOT SUPPORTED... |
| perceval | Mac OS X Snow Leopard (10.6.8) / x86_64 | NotNeeded | OK | [ OK ] | OK |
| oaxaca | Mac OS X Mavericks (10.9.5) / x86_64 | NotNeeded | OK | OK | OK |
##############################################################################
##############################################################################
###
### Running command:
###
### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch bigmemoryExtras_1.10.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/Users/biocbuild/bbs-3.0-bioc/meat/bigmemoryExtras.Rcheck’
* using R version 3.1.3 (2015-03-09)
* using platform: x86_64-apple-darwin10.8.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘bigmemoryExtras/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘bigmemoryExtras’ version ‘1.10.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
.BBSoptions
These were most likely included in error. See section ‘Package
structure’ in the ‘Writing R Extensions’ manual.
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘bigmemoryExtras’ can be installed ... [6s/7s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... NOTE
'library' or 'require' call to ‘biganalytics’ in package code.
Please use :: or requireNamespace() instead.
See section 'Suggested packages' in the 'Writing R Extensions' manual.
Unexported object imported by a ':::' call: ‘BiocGenerics:::testPackage’
See the note in ?`:::` about the use of this operator.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
Found the following possibly unsafe calls:
File ‘bigmemoryExtras/R/collections.R’:
unlockBinding(item, x)
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [3s/3s] OK
* checking for unstated dependencies in tests ... OK
* checking tests ...
Running ‘prove.R’ [6s/6s]
Comparing ‘prove.Rout’ to ‘prove.Rout.save’ ...10c10,15
< Attaching to on-disk data:/tmp/Rtmp8TXKVw/filec7e86e242143...
---
> Note: no visible binding for global variable '.xData'
> Note: no visible binding for global variable 'object'
> Note: no visible binding for global variable '.xData'
> Note: no visible binding for global variable '.xData'
> Note: no visible binding for global variable '.xData'
> Attaching to on-disk data:/tmp/Rtmpvp2xij/file6f6030905843...
12c17
< Attaching to on-disk data:/tmp/Rtmp8TXKVw/filec7e86e242143...
---
> Attaching to on-disk data:/tmp/Rtmpvp2xij/file6f6030905843...
14c19
< Attaching to on-disk data:/tmp/Rtmp8TXKVw/bigmat/ds...
---
> Attaching to on-disk data:/tmp/Rtmpvp2xij/bigmat/ds...
16c21
< Attaching to on-disk data:/tmp/Rtmp8TXKVw/bigmat/ds...
---
> Attaching to on-disk data:/tmp/Rtmpvp2xij/bigmat/ds...
33,38c38,42
< anyDuplicated, append, as.data.frame, as.vector, cbind, colnames,
< do.call, duplicated, eval, evalq, Filter, Find, get, intersect,
< is.unsorted, lapply, Map, mapply, match, mget, order, paste, pmax,
< pmax.int, pmin, pmin.int, Position, rank, rbind, Reduce, rep.int,
< rownames, sapply, setdiff, sort, table, tapply, union, unique,
< unlist, unsplit
---
> Filter, Find, Map, Position, Reduce, anyDuplicated, as.data.frame,
> cbind, colnames, duplicated, eval, get, intersect, lapply, mapply,
> match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank,
> rbind, rep.int, rownames, sapply, setdiff, sort, table, tapply,
> union, unique, unlist
48c52
< RUNIT TEST PROTOCOL -- Thu Apr 9 23:05:33 2015
---
> RUNIT TEST PROTOCOL -- Fri Aug 9 09:52:34 2013
[6s/6s] OK
* checking for unstated dependencies in vignettes ... NOTE
'library' or 'require' call not declared from: ‘GenomicRanges’
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
NOTE: There were 4 notes.
See
‘/Users/biocbuild/bbs-3.0-bioc/meat/bigmemoryExtras.Rcheck/00check.log’
for details.