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BioC 3.0: INSTALL report for SeqArray on oaxaca

This page was generated on 2015-04-10 10:07:03 -0700 (Fri, 10 Apr 2015).

Package 808/933HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
SeqArray 1.6.1
Xiuwen Zheng
Snapshot Date: 2015-04-09 16:20:12 -0700 (Thu, 09 Apr 2015)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_0/madman/Rpacks/SeqArray
Last Changed Rev: 98378 / Revision: 102249
Last Changed Date: 2015-01-15 13:30:03 -0800 (Thu, 15 Jan 2015)
zin1 Linux (Ubuntu 12.04.4 LTS) / x86_64  OK  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK  OK 
perceval Mac OS X Snow Leopard (10.6.8) / x86_64  OK  OK  OK  OK 
oaxaca Mac OS X Mavericks (10.9.5) / x86_64 [ OK ] OK  OK  OK 

Summary

Package: SeqArray
Version: 1.6.1
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL SeqArray
StartedAt: 2015-04-09 17:17:32 -0700 (Thu, 09 Apr 2015)
EndedAt: 2015-04-09 17:18:08 -0700 (Thu, 09 Apr 2015)
EllapsedTime: 35.8 seconds
RetCode: 0
Status:  OK 

Command output

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###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL SeqArray
###
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* installing to library ‘/Library/Frameworks/R.framework/Versions/3.1/Resources/library’
* installing *source* package ‘SeqArray’ ...
** libs
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -DUSING_R -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I"/Library/Frameworks/R.framework/Versions/3.1/Resources/library/gdsfmt/include"   -fPIC  -Wall -mtune=core2 -g -O2  -c ConvGDS2VCF.cpp -o ConvGDS2VCF.o
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -DUSING_R -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I"/Library/Frameworks/R.framework/Versions/3.1/Resources/library/gdsfmt/include"   -fPIC  -Wall -mtune=core2 -g -O2  -c ConvVCF2GDS.cpp -o ConvVCF2GDS.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -DUSING_R -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I"/Library/Frameworks/R.framework/Versions/3.1/Resources/library/gdsfmt/include"   -fPIC  -Wall -mtune=core2 -g -O2  -c R_SeqArray.c -o R_SeqArray.o
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -DUSING_R -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I"/Library/Frameworks/R.framework/Versions/3.1/Resources/library/gdsfmt/include"   -fPIC  -Wall -mtune=core2 -g -O2  -c ReadByVariant.cpp -o ReadByVariant.o
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -DUSING_R -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I"/Library/Frameworks/R.framework/Versions/3.1/Resources/library/gdsfmt/include"   -fPIC  -Wall -mtune=core2 -g -O2  -c SeqArray.cpp -o SeqArray.o
clang++ -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o SeqArray.so ConvGDS2VCF.o ConvVCF2GDS.o R_SeqArray.o ReadByVariant.o SeqArray.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Library/Frameworks/R.framework/Versions/3.1/Resources/library/SeqArray/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   ‘SeqArrayTutorial.Rnw’ 
** testing if installed package can be loaded
* DONE (SeqArray)