Pbase 0.4.0
Sebastian Gibb , Laurent Gatto
| Snapshot Date: 2014-11-16 16:20:11 -0800 (Sun, 16 Nov 2014) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_0/madman/Rpacks/Pbase | | Last Changed Rev: 95439 / Revision: 96805 | | Last Changed Date: 2014-10-13 14:38:33 -0700 (Mon, 13 Oct 2014) |
| zin1 | Linux (Ubuntu 12.04.4 LTS) / x86_64 | NotNeeded | ERROR | skipped | |
| moscato1 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | NotNeeded | [ ERROR ] | skipped | skipped |
| perceval | Mac OS X Snow Leopard (10.6.8) / x86_64 | NotNeeded | ERROR | skipped | skipped |
| oaxaca | Mac OS X Mavericks (10.9.5) / x86_64 | NotNeeded | ERROR | skipped | skipped |
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### Running command:
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### chmod a+r Pbase -R && D:\biocbld\bbs-3.0-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data Pbase
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* checking for file 'Pbase/DESCRIPTION' ... OK
* preparing 'Pbase':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ...Warning: running command '"D:/biocbld/bbs-3.0-bioc/R/bin/i386/Rscript" --vanilla --default-packages= -e "tools::buildVignettes(dir = '.', tangle = TRUE)"' had status 1
ERROR
Loading required package: BiocGenerics
Loading required package: parallel
Attaching package: 'BiocGenerics'
The following objects are masked from 'package:parallel':
clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
clusterExport, clusterMap, parApply, parCapply, parLapply,
parLapplyLB, parRapply, parSapply, parSapplyLB
The following object is masked from 'package:stats':
xtabs
The following objects are masked from 'package:base':
Filter, Find, Map, Position, Reduce, anyDuplicated, append,
as.data.frame, as.vector, cbind, colnames, do.call,
duplicated, eval, evalq, get, intersect, is.unsorted, lapply,
mapply, match, mget, order, paste, pmax, pmax.int, pmin,
pmin.int, rank, rbind, rep.int, rownames, sapply, setdiff,
sort, table, tapply, union, unique, unlist, unsplit
Loading required package: Rcpp
Loading required package: Gviz
Loading required package: grid
Loading required package: S4Vectors
Loading required package: stats4
Loading required package: IRanges
Loading required package: GenomeInfoDb
Loading required package: GenomicRanges
This is Pbase version 0.4.0
Loading required package: BSgenome
Loading required package: rtracklayer
Loading required package: GenomicFeatures
Loading required package: AnnotationDbi
Loading required package: Biobase
Welcome to Bioconductor
Vignettes contain introductory material; view with
'browseVignettes()'. To cite Bioconductor, see
'citation("Biobase")', and for packages 'citation("pkgname")'.
Attaching package: 'AnnotationDbi'
The following object is masked from 'package:BSgenome':
species
The following object is masked from 'package:GenomeInfoDb':
species
Quitting from lines 392-405 (mapping.Rmd)
Error: processing vignette 'mapping.Rmd' failed with diagnostics:
subscript contains NAs or out-of-bounds indices
Execution halted