BioC 3.0: CHECK report for NetPathMiner on moscato1
This page was generated on 2015-04-10 09:50:29 -0700 (Fri, 10 Apr 2015).
NetPathMiner 1.2.0
Ahmed Mohamed
| Snapshot Date: 2015-04-09 16:20:12 -0700 (Thu, 09 Apr 2015) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_0/madman/Rpacks/NetPathMiner | | Last Changed Rev: 95439 / Revision: 102249 | | Last Changed Date: 2014-10-13 14:38:33 -0700 (Mon, 13 Oct 2014) |
| zin1 | Linux (Ubuntu 12.04.4 LTS) / x86_64 | NotNeeded | OK | WARNINGS | |
| moscato1 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | NotNeeded | OK | [ WARNINGS ] | OK |
| perceval | Mac OS X Snow Leopard (10.6.8) / x86_64 | NotNeeded | OK | WARNINGS | OK |
| oaxaca | Mac OS X Mavericks (10.9.5) / x86_64 | NotNeeded | OK | WARNINGS | OK |
Summary
| Package: NetPathMiner
|
| Version: 1.2.0
|
| Command: rm -rf NetPathMiner.buildbin-libdir NetPathMiner.Rcheck && mkdir NetPathMiner.buildbin-libdir NetPathMiner.Rcheck && D:\biocbld\bbs-3.0-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=NetPathMiner.buildbin-libdir NetPathMiner_1.2.0.tar.gz >NetPathMiner.Rcheck\00install.out 2>&1 && cp NetPathMiner.Rcheck\00install.out NetPathMiner-install.out && D:\biocbld\bbs-3.0-bioc\R\bin\R.exe CMD check --library=NetPathMiner.buildbin-libdir --install="check:NetPathMiner-install.out" --force-multiarch --no-vignettes --timings NetPathMiner_1.2.0.tar.gz
|
| StartedAt: 2015-04-10 03:37:48 -0700 (Fri, 10 Apr 2015)
|
| EndedAt: 2015-04-10 03:42:17 -0700 (Fri, 10 Apr 2015)
|
| EllapsedTime: 269.3 seconds
|
| RetCode: 0
|
| Status: WARNINGS
|
| CheckDir: NetPathMiner.Rcheck
|
| Warnings: 1
|
Command output
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###
### Running command:
###
### rm -rf NetPathMiner.buildbin-libdir NetPathMiner.Rcheck && mkdir NetPathMiner.buildbin-libdir NetPathMiner.Rcheck && D:\biocbld\bbs-3.0-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=NetPathMiner.buildbin-libdir NetPathMiner_1.2.0.tar.gz >NetPathMiner.Rcheck\00install.out 2>&1 && cp NetPathMiner.Rcheck\00install.out NetPathMiner-install.out && D:\biocbld\bbs-3.0-bioc\R\bin\R.exe CMD check --library=NetPathMiner.buildbin-libdir --install="check:NetPathMiner-install.out" --force-multiarch --no-vignettes --timings NetPathMiner_1.2.0.tar.gz
###
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* using log directory 'D:/biocbld/bbs-3.0-bioc/meat/NetPathMiner.Rcheck'
* using R version 3.1.3 (2015-03-09)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'NetPathMiner/DESCRIPTION' ... OK
* this is package 'NetPathMiner' version '1.2.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'NetPathMiner' can be installed ... OK
* checking installed package size ... NOTE
installed size is 5.0Mb
sub-directories of 1Mb or more:
libs 3.6Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... NOTE
'library' or 'require' calls in package code:
'RCurl' 'RCytoscape' 'rBiopaxParser'
Please use :: or requireNamespace() instead.
See section 'Suggested packages' in the 'Writing R Extensions' manual.
package 'methods' is used but not declared
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
plotCytoscape: no visible global function definition for
'cy2.edge.names'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... WARNING
'library' or 'require' calls not declared from:
'ALL' 'GSEABase' 'clipper' 'graphite'
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking compiled code ... NOTE
Note: information on .o files for i386 is not available
Note: information on .o files for x64 is not available
File 'D:/biocbld/bbs-3.0-bioc/meat/NetPathMiner.buildbin-libdir/NetPathMiner/libs/i386/NetPathMiner.dll':
Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran)
Found 'puts', possibly from 'printf' (C), 'puts' (C)
Found 'rand', possibly from 'rand' (C)
File 'D:/biocbld/bbs-3.0-bioc/meat/NetPathMiner.buildbin-libdir/NetPathMiner/libs/x64/NetPathMiner.dll':
Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran)
Found 'puts', possibly from 'printf' (C), 'puts' (C)
Found 'rand', possibly from 'rand' (C)
Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor the system RNG.
The detected symbols are linked into the code but might come from
libraries and not actually be called.
See 'Writing portable packages' in the 'Writing R Extensions' manual.
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [47s] OK
Examples with CPU or elapsed time > 5s
user system elapsed
plotPaths 16.15 0 16.15
plotAllNetworks 6.53 0 6.53
** running examples for arch 'x64' ... [45s] OK
Examples with CPU or elapsed time > 5s
user system elapsed
plotPaths 15.28 0.09 15.36
plotAllNetworks 6.91 0.00 6.96
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
WARNING: There was 1 warning.
NOTE: There were 4 notes.
See
'D:/biocbld/bbs-3.0-bioc/meat/NetPathMiner.Rcheck/00check.log'
for details.
NetPathMiner.Rcheck/00install.out:
install for i386
* installing *source* package 'NetPathMiner' ...
* searching for boost headers ... not found. Untarring boost.tar.gz
* searching for NPM_dependencies file ... not found.
* Searching for libxml2 and libSBML ...
* compiling on Bioconductor machines...
* testing xmlParseFile in libxml2 ... success
* testing readSBML, SBMLDocument::getModel in libSBML ... failed
** Error Message: In file included from C:/libsbml//i386/include/sbml/xml/XMLInputStream.h:47:0,
from C:/libsbml//i386/include/sbml/SpeciesReference.h:268,
from C:/libsbml//i386/include/sbml/SBMLTransforms.h:48,
from C:/libsbml//i386/include/sbml/SBMLDocument.h:260,
from C:/libsbml//i386/include/sbml/SBMLTypes.h:34,
from sbml_test.cpp:3:
C:/libsbml//i386/include/sbml/xml/XMLTokenizer.h:48:21: warning: type attributes ignored after type is already defined [-Wattributes]
D:\biocbld\bbs-3.0-bioc\tmp\ccLrIx7A.o:sbml_test.cpp:(.text+0x20): undefined reference to `_imp___ZN12SBMLDocument8getModelEv'
collect2: ld returned 1 exit status
** Although libSBML headers and binaries were found, compiler failed.
Please ensure that libSBML is built using GCC compiler.
** libs
g++ -m32 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -DWIN_COMPILE -I. -ID:/biocbld/BBS-3˜1.0-B/R/include -DHAVE_XML -Ic:/libxml2//i386/include/libxml2 -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -mtune=core2 -c PathRanker.cpp -o PathRanker.o
gcc -m32 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -DWIN_COMPILE -I. -ID:/biocbld/BBS-3˜1.0-B/R/include -DHAVE_XML -Ic:/libxml2//i386/include/libxml2 -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O3 -Wall -std=gnu99 -mtune=core2 -c handlesegfault.c -o handlesegfault.o
gcc -m32 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -DWIN_COMPILE -I. -ID:/biocbld/BBS-3˜1.0-B/R/include -DHAVE_XML -Ic:/libxml2//i386/include/libxml2 -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O3 -Wall -std=gnu99 -mtune=core2 -c hme3m.c -o hme3m.o
gcc -m32 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -DWIN_COMPILE -I. -ID:/biocbld/BBS-3˜1.0-B/R/include -DHAVE_XML -Ic:/libxml2//i386/include/libxml2 -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O3 -Wall -std=gnu99 -mtune=core2 -c init.c -o init.o
g++ -m32 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -DWIN_COMPILE -I. -ID:/biocbld/BBS-3˜1.0-B/R/include -DHAVE_XML -Ic:/libxml2//i386/include/libxml2 -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -mtune=core2 -c kgml_interface.cpp -o kgml_interface.o
g++ -m32 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -DWIN_COMPILE -I. -ID:/biocbld/BBS-3˜1.0-B/R/include -DHAVE_XML -Ic:/libxml2//i386/include/libxml2 -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -mtune=core2 -c methods.cpp -o methods.o
g++ -m32 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -DWIN_COMPILE -I. -ID:/biocbld/BBS-3˜1.0-B/R/include -DHAVE_XML -Ic:/libxml2//i386/include/libxml2 -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -mtune=core2 -c pathScope.cpp -o pathScope.o
g++ -m32 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -DWIN_COMPILE -I. -ID:/biocbld/BBS-3˜1.0-B/R/include -DHAVE_XML -Ic:/libxml2//i386/include/libxml2 -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -mtune=core2 -c sbml_interface.cpp -o sbml_interface.o
g++ -m32 -shared -s -static-libgcc -o NetPathMiner.dll tmp.def PathRanker.o handlesegfault.o hme3m.o init.o kgml_interface.o methods.o pathScope.o sbml_interface.o -Lc:/libxml2//i386/lib -lxml2 -lws2_32 -LD:/biocbld/BBS-3˜1.0-B/R/bin/i386 -lRlapack -LD:/biocbld/BBS-3˜1.0-B/R/bin/i386 -lRblas -lgfortran -Ld:/RCompile/CRANpkg/extralibs64/local/lib/i386 -Ld:/RCompile/CRANpkg/extralibs64/local/lib -LD:/biocbld/BBS-3˜1.0-B/R/bin/i386 -lR
installing to D:/biocbld/bbs-3.0-bioc/meat/NetPathMiner.buildbin-libdir/NetPathMiner/libs/i386
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
install for x64
* installing *source* package 'NetPathMiner' ...
* searching for boost headers ... not found. Untarring boost.tar.gz
* searching for NPM_dependencies file ... not found.
* Searching for libxml2 and libSBML ...
* compiling on Bioconductor machines...
* testing xmlParseFile in libxml2 ... success
* testing readSBML, SBMLDocument::getModel in libSBML ... failed
** Error Message: In file included from C:/libsbml//x64/include/sbml/xml/XMLInputStream.h:47:0,
from C:/libsbml//x64/include/sbml/SpeciesReference.h:268,
from C:/libsbml//x64/include/sbml/SBMLTransforms.h:48,
from C:/libsbml//x64/include/sbml/SBMLDocument.h:260,
from C:/libsbml//x64/include/sbml/SBMLTypes.h:34,
from sbml_test.cpp:3:
C:/libsbml//x64/include/sbml/xml/XMLTokenizer.h:48:21: warning: type attributes ignored after type is already defined [-Wattributes]
D:\biocbld\bbs-3.0-bioc\tmp\ccXnxB18.o:sbml_test.cpp:(.text+0x23): undefined reference to `__imp__ZN12SBMLDocument8getModelEv'
collect2: ld returned 1 exit status
** Although libSBML headers and binaries were found, compiler failed.
Please ensure that libSBML is built using GCC compiler.
** libs
g++ -m64 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -DWIN_COMPILE -I. -ID:/biocbld/BBS-3˜1.0-B/R/include -DHAVE_XML -Ic:/libxml2//x64/include/libxml2 -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -mtune=core2 -c PathRanker.cpp -o PathRanker.o
gcc -m64 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -DWIN_COMPILE -I. -ID:/biocbld/BBS-3˜1.0-B/R/include -DHAVE_XML -Ic:/libxml2//x64/include/libxml2 -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -std=gnu99 -mtune=core2 -c handlesegfault.c -o handlesegfault.o
gcc -m64 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -DWIN_COMPILE -I. -ID:/biocbld/BBS-3˜1.0-B/R/include -DHAVE_XML -Ic:/libxml2//x64/include/libxml2 -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -std=gnu99 -mtune=core2 -c hme3m.c -o hme3m.o
gcc -m64 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -DWIN_COMPILE -I. -ID:/biocbld/BBS-3˜1.0-B/R/include -DHAVE_XML -Ic:/libxml2//x64/include/libxml2 -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -std=gnu99 -mtune=core2 -c init.c -o init.o
g++ -m64 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -DWIN_COMPILE -I. -ID:/biocbld/BBS-3˜1.0-B/R/include -DHAVE_XML -Ic:/libxml2//x64/include/libxml2 -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -mtune=core2 -c kgml_interface.cpp -o kgml_interface.o
g++ -m64 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -DWIN_COMPILE -I. -ID:/biocbld/BBS-3˜1.0-B/R/include -DHAVE_XML -Ic:/libxml2//x64/include/libxml2 -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -mtune=core2 -c methods.cpp -o methods.o
g++ -m64 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -DWIN_COMPILE -I. -ID:/biocbld/BBS-3˜1.0-B/R/include -DHAVE_XML -Ic:/libxml2//x64/include/libxml2 -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -mtune=core2 -c pathScope.cpp -o pathScope.o
g++ -m64 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -DWIN_COMPILE -I. -ID:/biocbld/BBS-3˜1.0-B/R/include -DHAVE_XML -Ic:/libxml2//x64/include/libxml2 -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -mtune=core2 -c sbml_interface.cpp -o sbml_interface.o
g++ -m64 -shared -s -static-libgcc -o NetPathMiner.dll tmp.def PathRanker.o handlesegfault.o hme3m.o init.o kgml_interface.o methods.o pathScope.o sbml_interface.o -Lc:/libxml2//x64/lib -lxml2 -lws2_32 -LD:/biocbld/BBS-3˜1.0-B/R/bin/x64 -lRlapack -LD:/biocbld/BBS-3˜1.0-B/R/bin/x64 -lRblas -lgfortran -Ld:/RCompile/CRANpkg/extralibs64/local/lib/x64 -Ld:/RCompile/CRANpkg/extralibs64/local/lib -LD:/biocbld/BBS-3˜1.0-B/R/bin/x64 -lR
installing to D:/biocbld/bbs-3.0-bioc/meat/NetPathMiner.buildbin-libdir/NetPathMiner/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'NetPathMiner' as NetPathMiner_1.2.0.zip
* DONE (NetPathMiner)
NetPathMiner.Rcheck/examples_i386/NetPathMiner-Ex.timings:
| name | user | system | elapsed
|
| KGML2igraph | 0.30 | 0.00 | 0.42 |
|
| MIRIAM | 0.07 | 0.00 | 0.50 |
|
| NPMdefaults | 0.02 | 0.00 | 0.02 |
|
| SBML2igraph | 0 | 0 | 0 |
|
| assignEdgeWeights | 0.39 | 0.00 | 0.39 |
|
| biopax2igraph | 1.23 | 0.00 | 2.24 |
|
| colorVertexByAttr | 0.36 | 0.03 | 0.39 |
|
| ex_biopax | 0.01 | 0.00 | 0.02 |
|
| ex_kgml_sig | 0.47 | 0.00 | 0.46 |
|
| ex_microarray | 0.02 | 0.00 | 0.02 |
|
| ex_sbml | 3.93 | 0.00 | 3.93 |
|
| extractPathNetwork | 1.18 | 0.00 | 1.19 |
|
| getAttr | 0.02 | 0.00 | 0.01 |
|
| getGeneSetNetworks | 0 | 0 | 0 |
|
| getGeneSets | 0.03 | 0.00 | 0.03 |
|
| getPathsAsEIDs | 1.27 | 0.00 | 1.26 |
|
| layoutVertexByAttr | 1.17 | 0.00 | 1.17 |
|
| makeGeneNetwork | 0.15 | 0.00 | 0.16 |
|
| makeReactionNetwork | 0.08 | 0.00 | 0.08 |
|
| pathClassifier | 0.94 | 0.00 | 0.93 |
|
| pathCluster | 0.36 | 0.00 | 0.36 |
|
| pathRanker | 1.03 | 0.03 | 1.47 |
|
| pathsToBinary | 0.93 | 0.00 | 0.93 |
|
| plotAllNetworks | 6.53 | 0.00 | 6.53 |
|
| plotClusters | 1.17 | 0.00 | 1.17 |
|
| plotCytoscape | 0.66 | 0.00 | 1.50 |
|
| plotNetwork | 1.31 | 0.00 | 1.39 |
|
| plotPathClassifier | 0.87 | 0.00 | 0.87 |
|
| plotPathCluster | 0.33 | 0.00 | 0.33 |
|
| plotPaths | 16.15 | 0.00 | 16.15 |
|
| predictPathClassifier | 0.68 | 0.02 | 0.70 |
|
| predictPathCluster | 0.33 | 0.00 | 0.33 |
|
| rmSmallCompounds | 0.08 | 0.00 | 0.08 |
|
| samplePaths | 0.69 | 0.00 | 0.68 |
|
| simplifyReactionNetwork | 0.06 | 0.00 | 0.06 |
|
| toGraphNEL | 0.44 | 0.02 | 0.45 |
|
| vertexDeleteReconnect | 0.09 | 0.00 | 0.10 |
|
NetPathMiner.Rcheck/examples_x64/NetPathMiner-Ex.timings:
| name | user | system | elapsed
|
| KGML2igraph | 0.31 | 0.00 | 0.31 |
|
| MIRIAM | 0.08 | 0.01 | 0.13 |
|
| NPMdefaults | 0 | 0 | 0 |
|
| SBML2igraph | 0.01 | 0.00 | 0.01 |
|
| assignEdgeWeights | 0.44 | 0.00 | 0.44 |
|
| biopax2igraph | 1.20 | 0.05 | 1.26 |
|
| colorVertexByAttr | 0.39 | 0.00 | 0.39 |
|
| ex_biopax | 0.01 | 0.00 | 0.02 |
|
| ex_kgml_sig | 0.43 | 0.03 | 0.45 |
|
| ex_microarray | 0.01 | 0.00 | 0.02 |
|
| ex_sbml | 4.01 | 0.00 | 4.01 |
|
| extractPathNetwork | 1.87 | 0.00 | 1.87 |
|
| getAttr | 0.03 | 0.02 | 0.05 |
|
| getGeneSetNetworks | 0.01 | 0.00 | 0.02 |
|
| getGeneSets | 0.05 | 0.00 | 0.04 |
|
| getPathsAsEIDs | 1.09 | 0.00 | 1.09 |
|
| layoutVertexByAttr | 0.94 | 0.01 | 0.95 |
|
| makeGeneNetwork | 0.10 | 0.00 | 0.14 |
|
| makeReactionNetwork | 0.07 | 0.00 | 0.07 |
|
| pathClassifier | 1.39 | 0.00 | 1.38 |
|
| pathCluster | 0.46 | 0.02 | 0.49 |
|
| pathRanker | 1.13 | 0.00 | 1.12 |
|
| pathsToBinary | 0.87 | 0.00 | 0.87 |
|
| plotAllNetworks | 6.91 | 0.00 | 6.96 |
|
| plotClusters | 1.12 | 0.01 | 1.14 |
|
| plotCytoscape | 0.65 | 0.02 | 0.67 |
|
| plotNetwork | 1.36 | 0.00 | 1.35 |
|
| plotPathClassifier | 0.91 | 0.00 | 0.91 |
|
| plotPathCluster | 0.32 | 0.00 | 0.33 |
|
| plotPaths | 15.28 | 0.09 | 15.36 |
|
| predictPathClassifier | 0.75 | 0.00 | 0.75 |
|
| predictPathCluster | 0.37 | 0.00 | 0.38 |
|
| rmSmallCompounds | 0.08 | 0.02 | 0.09 |
|
| samplePaths | 0.67 | 0.00 | 0.67 |
|
| simplifyReactionNetwork | 0.08 | 0.00 | 0.08 |
|
| toGraphNEL | 0.46 | 0.01 | 0.48 |
|
| vertexDeleteReconnect | 0.13 | 0.00 | 0.12 |
|