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BioC 3.0: BUILD BIN report for NarrowPeaks on oaxaca

This page was generated on 2015-04-10 10:05:49 -0700 (Fri, 10 Apr 2015).

Package 595/933HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
NarrowPeaks 1.10.0
Pedro Madrigal
Snapshot Date: 2015-04-09 16:20:12 -0700 (Thu, 09 Apr 2015)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_0/madman/Rpacks/NarrowPeaks
Last Changed Rev: 95439 / Revision: 102249
Last Changed Date: 2014-10-13 14:38:33 -0700 (Mon, 13 Oct 2014)
zin1 Linux (Ubuntu 12.04.4 LTS) / x86_64  NotNeeded  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  NotNeeded  OK  OK  OK 
perceval Mac OS X Snow Leopard (10.6.8) / x86_64  NotNeeded  OK  OK  OK 
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded  OK  OK [ OK ]

Summary

Package: NarrowPeaks
Version: 1.10.0
Command: rm -rf NarrowPeaks.buildbin-libdir && mkdir NarrowPeaks.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh NarrowPeaks_1.10.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R NarrowPeaks.buildbin-libdir
StartedAt: 2015-04-10 04:46:37 -0700 (Fri, 10 Apr 2015)
EndedAt: 2015-04-10 04:46:55 -0700 (Fri, 10 Apr 2015)
EllapsedTime: 17.8 seconds
RetCode: 0
Status:  OK 
PackageFile: NarrowPeaks_1.10.0.tgz
PackageFileSize: 308.7 KiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf NarrowPeaks.buildbin-libdir && mkdir NarrowPeaks.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh NarrowPeaks_1.10.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R NarrowPeaks.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=NarrowPeaks.buildbin-libdir NarrowPeaks_1.10.0.tar.gz'
>>>>>>> 

* installing *source* package ‘NarrowPeaks’ ...
** libs
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include    -fPIC  -Wall -mtune=core2 -g -O2  -c wig2CSARScore.c -o wig2CSARScore.o
wig2CSARScore.c:240:11: warning: explicitly assigning a variable of type 'int' to itself [-Wself-assign]
                                        for(i=i;i<x+span_c;i++){
                                            ˜^˜
wig2CSARScore.c:246:10: warning: explicitly assigning a variable of type 'int' to itself [-Wself-assign]
                                for(i=i;i<=chrL[m];i++)
                                    ˜^˜
wig2CSARScore.c:267:11: warning: explicitly assigning a variable of type 'int' to itself [-Wself-assign]
                                        for(i=i;i<x+span_c;i++){
                                            ˜^˜
wig2CSARScore.c:273:10: warning: explicitly assigning a variable of type 'int' to itself [-Wself-assign]
                                for(i=i;i<=chrL[m];i++)
                                    ˜^˜
wig2CSARScore.c:352:11: warning: explicitly assigning a variable of type 'int' to itself [-Wself-assign]
                                        for(i=i;i<start_c+span_c;i++){
                                            ˜^˜
wig2CSARScore.c:359:10: warning: explicitly assigning a variable of type 'int' to itself [-Wself-assign]
                                for(i=i;i<=chrL[m];i++)
                                    ˜^˜
wig2CSARScore.c:380:11: warning: explicitly assigning a variable of type 'int' to itself [-Wself-assign]
                                        for(i=i;i<start_c+span_c;i++){
                                            ˜^˜
wig2CSARScore.c:387:10: warning: explicitly assigning a variable of type 'int' to itself [-Wself-assign]
                                for(i=i;i<=chrL[m];i++)
                                    ˜^˜
8 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include    -fPIC  -Wall -mtune=core2 -g -O2  -c wig2CSARScore_R_wrapper.c -o wig2CSARScore_R_wrapper.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o NarrowPeaks.so wig2CSARScore.o wig2CSARScore_R_wrapper.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.0-bioc/meat/NarrowPeaks.buildbin-libdir/NarrowPeaks/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (NarrowPeaks)


>>>>>>> 
>>>>>>> FIXING LINKS FOR NarrowPeaks.buildbin-libdir/NarrowPeaks/libs//NarrowPeaks.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.1/Resources/lib/libgcc_s.1.dylib" "NarrowPeaks.buildbin-libdir/NarrowPeaks/libs//NarrowPeaks.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.1/Resources/lib/libgfortran.3.dylib" "NarrowPeaks.buildbin-libdir/NarrowPeaks/libs//NarrowPeaks.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.1/Resources/lib/libreadline.5.2.dylib" "NarrowPeaks.buildbin-libdir/NarrowPeaks/libs//NarrowPeaks.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.1/Resources/lib/libreadline.dylib" "NarrowPeaks.buildbin-libdir/NarrowPeaks/libs//NarrowPeaks.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.1/Resources/lib/libquadmath.0.dylib" "NarrowPeaks.buildbin-libdir/NarrowPeaks/libs//NarrowPeaks.so"