BioC 3.0: CHECK report for IMPCdata on perceval

Package: IMPCdata

Version: 1.0.0

Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch IMPCdata_1.0.0.tar.gz

StartedAt: 2015-04-10 02:52:44 -0700 (Fri, 10 Apr 2015)

EndedAt: 2015-04-10 02:56:09 -0700 (Fri, 10 Apr 2015)

EllapsedTime: 205.8 seconds

RetCode: 0

Status:  OK

CheckDir: IMPCdata.Rcheck

Warnings: 0

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch IMPCdata_1.0.0.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-3.0-bioc/meat/IMPCdata.Rcheck’
* using R version 3.1.3 (2015-03-09)
* using platform: x86_64-apple-darwin10.8.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘IMPCdata/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘IMPCdata’ version ‘1.0.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘IMPCdata’ can be installed ... [1s/2s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [2s/185s] OK
Examples with CPU or elapsed time > 5s
                  user system elapsed
printAlleles     0.214  0.045  31.945
getAlleles       0.187  0.061  32.097
getGenes         0.187  0.061  31.867
printGenes       0.164  0.055  32.007
getParameters    0.046  0.017   8.257
printParameters  0.044  0.015   8.224
printProcedures  0.037  0.011   7.353
getProcedures    0.035  0.011   7.430
printPhenCenters 0.029  0.011   8.933
getPhenCenters   0.017  0.007   5.223
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

* installing *source* package ‘IMPCdata’ ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (IMPCdata)

name	user	system	elapsed
getAlleles	0.187	0.061	32.097
getGenes	0.187	0.061	31.867
getIMPCDataset	0.509	0.010	2.975
getIMPCTable	0.013	0.003	1.324
getName	0.002	0.001	0.359
getParameters	0.046	0.017	8.257
getPhenCenters	0.017	0.007	5.223
getPipelines	0.003	0.001	0.756
getProcedures	0.035	0.011	7.430
getStrains	0.010	0.003	2.105
getZygosities	0.002	0.001	0.316
printAlleles	0.214	0.045	31.945
printGenes	0.164	0.055	32.007
printParameters	0.044	0.015	8.224
printPhenCenters	0.029	0.011	8.933
printPipelines	0.003	0.002	0.754
printProcedures	0.037	0.011	7.353
printStrains	0.010	0.004	2.050