BioC 3.0: CHECK report for HilbertVisGUI on moscato1

Package: HilbertVisGUI

Version: 1.24.0

Command: rm -rf HilbertVisGUI.buildbin-libdir HilbertVisGUI.Rcheck && mkdir HilbertVisGUI.buildbin-libdir HilbertVisGUI.Rcheck && D:\biocbld\bbs-3.0-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=HilbertVisGUI.buildbin-libdir HilbertVisGUI_1.24.0.tar.gz >HilbertVisGUI.Rcheck\00install.out 2>&1 && cp HilbertVisGUI.Rcheck\00install.out HilbertVisGUI-install.out && D:\biocbld\bbs-3.0-bioc\R\bin\R.exe CMD check --library=HilbertVisGUI.buildbin-libdir --install="check:HilbertVisGUI-install.out" --force-multiarch --no-vignettes --timings HilbertVisGUI_1.24.0.tar.gz

StartedAt: 2015-04-10 02:11:01 -0700 (Fri, 10 Apr 2015)

EndedAt: 2015-04-10 02:12:33 -0700 (Fri, 10 Apr 2015)

EllapsedTime: 92.2 seconds

RetCode: 0

Status:  WARNINGS

CheckDir: HilbertVisGUI.Rcheck

Warnings: 1

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###
### Running command:
###
###   rm -rf HilbertVisGUI.buildbin-libdir HilbertVisGUI.Rcheck && mkdir HilbertVisGUI.buildbin-libdir HilbertVisGUI.Rcheck && D:\biocbld\bbs-3.0-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=HilbertVisGUI.buildbin-libdir HilbertVisGUI_1.24.0.tar.gz >HilbertVisGUI.Rcheck\00install.out 2>&1 && cp HilbertVisGUI.Rcheck\00install.out HilbertVisGUI-install.out  && D:\biocbld\bbs-3.0-bioc\R\bin\R.exe CMD check --library=HilbertVisGUI.buildbin-libdir --install="check:HilbertVisGUI-install.out" --force-multiarch --no-vignettes --timings HilbertVisGUI_1.24.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'D:/biocbld/bbs-3.0-bioc/meat/HilbertVisGUI.Rcheck'
* using R version 3.1.3 (2015-03-09)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'HilbertVisGUI/DESCRIPTION' ... OK
* this is package 'HilbertVisGUI' version '1.24.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'HilbertVisGUI' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... WARNING
Found the following file(s) containing GNU extensions:
  src/Makevars
Portable Makefiles do not use GNU extensions such as +=, :=, $(shell),
$(wildcard), ifeq ... endif. See section 'Writing portable packages' in
the 'Writing R Extensions' manual.
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking compiled code ... NOTE
Note: information on .o files for i386 is not available
Note: information on .o files for x64 is not available
File 'D:/biocbld/bbs-3.0-bioc/meat/HilbertVisGUI.buildbin-libdir/HilbertVisGUI/libs/i386/HilbertVisGUI.dll':
  Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran)
File 'D:/biocbld/bbs-3.0-bioc/meat/HilbertVisGUI.buildbin-libdir/HilbertVisGUI/libs/x64/HilbertVisGUI.dll':
  Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran)

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor the system RNG.
The detected symbols are linked into the code but might come from
libraries and not actually be called.

See 'Writing portable packages' in the 'Writing R Extensions' manual.
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [2s] OK
** running examples for arch 'x64' ... [2s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

WARNING: There was 1 warning.
NOTE: There was 1 note.
See
  'D:/biocbld/bbs-3.0-bioc/meat/HilbertVisGUI.Rcheck/00check.log'
for details.

install for i386

* installing *source* package 'HilbertVisGUI' ...

   **********************************************
   WARNING: this package has a configure script
         It probably needs manual configuration
   **********************************************


** libs
gcc -m32 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -mms-bitfields -Ic:/gtkmm/i386/include/gtkmm-2.4 -Ic:/gtkmm/i386/lib/gtkmm-2.4/include -Ic:/gtkmm/i386/include/atkmm-1.6 -Ic:/gtkmm/i386/include/giomm-2.4 -Ic:/gtkmm/i386/lib/giomm-2.4/include -Ic:/gtkmm/i386/include/pangomm-1.4 -Ic:/gtkmm/i386/lib/pangomm-1.4/include -Ic:/gtkmm/i386/include/gtk-2.0 -Ic:/gtkmm/i386/include/gdkmm-2.4 -Ic:/gtkmm/i386/lib/gdkmm-2.4/include -Ic:/gtkmm/i386/include/atk-1.0 -Ic:/gtkmm/i386/include/glibmm-2.4 -Ic:/gtkmm/i386/lib/glibmm-2.4/include -Ic:/gtkmm/i386/include/glib-2.0 -Ic:/gtkmm/i386/lib/glib-2.0/include -Ic:/gtkmm/i386/include/sigc++-2.0 -Ic:/gtkmm/i386/lib/sigc++-2.0/include -Ic:/gtkmm/i386/include/cairomm-1.0 -Ic:/gtkmm/i386/lib/cairomm-1.0/include -Ic:/gtkmm/i386/include/pango-1.0 -Ic:/gtkmm/i386/include/cairo -Ic:/gtkmm/i386/include -Ic:/gtkmm/i386/include/freetype2 -Ic:/gtkmm/i386/include/libpng14 -Ic:/gtkmm/i386/lib/gtk-2.0/include -Ic:/gtkmm/i386/include/gdk-pixbuf-2.0   -DSO_NAME=HilbertVisGUI -DMSWINDOWS    -I"d:/RCompile/CRANpkg/extralibs64/local/include"  -mms-bitfields -Ic:/gtkmm/i386/include/gtkmm-2.4 -Ic:/gtkmm/i386/lib/gtkmm-2.4/include -Ic:/gtkmm/i386/include/atkmm-1.6 -Ic:/gtkmm/i386/include/giomm-2.4 -Ic:/gtkmm/i386/lib/giomm-2.4/include -Ic:/gtkmm/i386/include/pangomm-1.4 -Ic:/gtkmm/i386/lib/pangomm-1.4/include -Ic:/gtkmm/i386/include/gtk-2.0 -Ic:/gtkmm/i386/include/gdkmm-2.4 -Ic:/gtkmm/i386/lib/gdkmm-2.4/include -Ic:/gtkmm/i386/include/atk-1.0 -Ic:/gtkmm/i386/include/glibmm-2.4 -Ic:/gtkmm/i386/lib/glibmm-2.4/include -Ic:/gtkmm/i386/include/glib-2.0 -Ic:/gtkmm/i386/lib/glib-2.0/include -Ic:/gtkmm/i386/include/sigc++-2.0 -Ic:/gtkmm/i386/lib/sigc++-2.0/include -Ic:/gtkmm/i386/include/cairomm-1.0 -Ic:/gtkmm/i386/lib/cairomm-1.0/include -Ic:/gtkmm/i386/include/pango-1.0 -Ic:/gtkmm/i386/include/cairo -Ic:/gtkmm/i386/include -Ic:/gtkmm/i386/include/freetype2 -Ic:/gtkmm/i386/include/libpng14 -Ic:/gtkmm/i386/lib/gtk-2.0/include -Ic:/gtkmm/i386/include/gdk-pixbuf-2.0   -DSO_NAME=HilbertVisGUI -DMSWINDOWS   -O3 -Wall  -std=gnu99 -mtune=core2 -c R_env_prot.c -o R_env_prot.o
g++ -m32 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -mms-bitfields -Ic:/gtkmm/i386/include/gtkmm-2.4 -Ic:/gtkmm/i386/lib/gtkmm-2.4/include -Ic:/gtkmm/i386/include/atkmm-1.6 -Ic:/gtkmm/i386/include/giomm-2.4 -Ic:/gtkmm/i386/lib/giomm-2.4/include -Ic:/gtkmm/i386/include/pangomm-1.4 -Ic:/gtkmm/i386/lib/pangomm-1.4/include -Ic:/gtkmm/i386/include/gtk-2.0 -Ic:/gtkmm/i386/include/gdkmm-2.4 -Ic:/gtkmm/i386/lib/gdkmm-2.4/include -Ic:/gtkmm/i386/include/atk-1.0 -Ic:/gtkmm/i386/include/glibmm-2.4 -Ic:/gtkmm/i386/lib/glibmm-2.4/include -Ic:/gtkmm/i386/include/glib-2.0 -Ic:/gtkmm/i386/lib/glib-2.0/include -Ic:/gtkmm/i386/include/sigc++-2.0 -Ic:/gtkmm/i386/lib/sigc++-2.0/include -Ic:/gtkmm/i386/include/cairomm-1.0 -Ic:/gtkmm/i386/lib/cairomm-1.0/include -Ic:/gtkmm/i386/include/pango-1.0 -Ic:/gtkmm/i386/include/cairo -Ic:/gtkmm/i386/include -Ic:/gtkmm/i386/include/freetype2 -Ic:/gtkmm/i386/include/libpng14 -Ic:/gtkmm/i386/lib/gtk-2.0/include -Ic:/gtkmm/i386/include/gdk-pixbuf-2.0   -DSO_NAME=HilbertVisGUI -DMSWINDOWS    -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c R_interface.cc -o R_interface.o
In file included from D:/biocbld/BBS-3˜1.0-B/R/include/R.h:50:0,
                 from R_interface.cc:17:
D:/biocbld/BBS-3˜1.0-B/R/include/R_ext/RS.h:45:0: warning: "ERROR" redefined [enabled by default]
c:\rtools31\gcc-4.6.3\bin\../lib/gcc/i686-w64-mingw32/4.6.3/../../../../i686-w64-mingw32/include/wingdi.h:70:0: note: this is the location of the previous definition
R_interface.cc: In function 'SEXPREC* R_display_hilbert(SEXP)':
R_interface.cc:510:44: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
R_interface.cc:509:11: warning: unused variable 'palette_level' [-Wunused-variable]
R_interface.cc: In member function 'void MainWindowForRForBidir::set_palette_level(double)':
R_interface.cc:702:44: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
R_interface.cc: In member function 'double RDataVector<data_el_t>::get_bin_value(long int, long int) const [with data_el_t = int]':
R_interface.cc:131:9: warning: 'val' may be used uninitialized in this function [-Wuninitialized]
R_interface.cc: In member function 'double RDataVector<data_el_t>::get_bin_value(long int, long int) const [with data_el_t = double]':
R_interface.cc:204:29: warning: 'val' may be used uninitialized in this function [-Wuninitialized]
g++ -m32 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -mms-bitfields -Ic:/gtkmm/i386/include/gtkmm-2.4 -Ic:/gtkmm/i386/lib/gtkmm-2.4/include -Ic:/gtkmm/i386/include/atkmm-1.6 -Ic:/gtkmm/i386/include/giomm-2.4 -Ic:/gtkmm/i386/lib/giomm-2.4/include -Ic:/gtkmm/i386/include/pangomm-1.4 -Ic:/gtkmm/i386/lib/pangomm-1.4/include -Ic:/gtkmm/i386/include/gtk-2.0 -Ic:/gtkmm/i386/include/gdkmm-2.4 -Ic:/gtkmm/i386/lib/gdkmm-2.4/include -Ic:/gtkmm/i386/include/atk-1.0 -Ic:/gtkmm/i386/include/glibmm-2.4 -Ic:/gtkmm/i386/lib/glibmm-2.4/include -Ic:/gtkmm/i386/include/glib-2.0 -Ic:/gtkmm/i386/lib/glib-2.0/include -Ic:/gtkmm/i386/include/sigc++-2.0 -Ic:/gtkmm/i386/lib/sigc++-2.0/include -Ic:/gtkmm/i386/include/cairomm-1.0 -Ic:/gtkmm/i386/lib/cairomm-1.0/include -Ic:/gtkmm/i386/include/pango-1.0 -Ic:/gtkmm/i386/include/cairo -Ic:/gtkmm/i386/include -Ic:/gtkmm/i386/include/freetype2 -Ic:/gtkmm/i386/include/libpng14 -Ic:/gtkmm/i386/lib/gtk-2.0/include -Ic:/gtkmm/i386/include/gdk-pixbuf-2.0   -DSO_NAME=HilbertVisGUI -DMSWINDOWS    -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c colorizers.cc -o colorizers.o
g++ -m32 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -mms-bitfields -Ic:/gtkmm/i386/include/gtkmm-2.4 -Ic:/gtkmm/i386/lib/gtkmm-2.4/include -Ic:/gtkmm/i386/include/atkmm-1.6 -Ic:/gtkmm/i386/include/giomm-2.4 -Ic:/gtkmm/i386/lib/giomm-2.4/include -Ic:/gtkmm/i386/include/pangomm-1.4 -Ic:/gtkmm/i386/lib/pangomm-1.4/include -Ic:/gtkmm/i386/include/gtk-2.0 -Ic:/gtkmm/i386/include/gdkmm-2.4 -Ic:/gtkmm/i386/lib/gdkmm-2.4/include -Ic:/gtkmm/i386/include/atk-1.0 -Ic:/gtkmm/i386/include/glibmm-2.4 -Ic:/gtkmm/i386/lib/glibmm-2.4/include -Ic:/gtkmm/i386/include/glib-2.0 -Ic:/gtkmm/i386/lib/glib-2.0/include -Ic:/gtkmm/i386/include/sigc++-2.0 -Ic:/gtkmm/i386/lib/sigc++-2.0/include -Ic:/gtkmm/i386/include/cairomm-1.0 -Ic:/gtkmm/i386/lib/cairomm-1.0/include -Ic:/gtkmm/i386/include/pango-1.0 -Ic:/gtkmm/i386/include/cairo -Ic:/gtkmm/i386/include -Ic:/gtkmm/i386/include/freetype2 -Ic:/gtkmm/i386/include/libpng14 -Ic:/gtkmm/i386/lib/gtk-2.0/include -Ic:/gtkmm/i386/include/gdk-pixbuf-2.0   -DSO_NAME=HilbertVisGUI -DMSWINDOWS    -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c display.cc -o display.o
g++ -m32 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -mms-bitfields -Ic:/gtkmm/i386/include/gtkmm-2.4 -Ic:/gtkmm/i386/lib/gtkmm-2.4/include -Ic:/gtkmm/i386/include/atkmm-1.6 -Ic:/gtkmm/i386/include/giomm-2.4 -Ic:/gtkmm/i386/lib/giomm-2.4/include -Ic:/gtkmm/i386/include/pangomm-1.4 -Ic:/gtkmm/i386/lib/pangomm-1.4/include -Ic:/gtkmm/i386/include/gtk-2.0 -Ic:/gtkmm/i386/include/gdkmm-2.4 -Ic:/gtkmm/i386/lib/gdkmm-2.4/include -Ic:/gtkmm/i386/include/atk-1.0 -Ic:/gtkmm/i386/include/glibmm-2.4 -Ic:/gtkmm/i386/lib/glibmm-2.4/include -Ic:/gtkmm/i386/include/glib-2.0 -Ic:/gtkmm/i386/lib/glib-2.0/include -Ic:/gtkmm/i386/include/sigc++-2.0 -Ic:/gtkmm/i386/lib/sigc++-2.0/include -Ic:/gtkmm/i386/include/cairomm-1.0 -Ic:/gtkmm/i386/lib/cairomm-1.0/include -Ic:/gtkmm/i386/include/pango-1.0 -Ic:/gtkmm/i386/include/cairo -Ic:/gtkmm/i386/include -Ic:/gtkmm/i386/include/freetype2 -Ic:/gtkmm/i386/include/libpng14 -Ic:/gtkmm/i386/lib/gtk-2.0/include -Ic:/gtkmm/i386/include/gdk-pixbuf-2.0   -DSO_NAME=HilbertVisGUI -DMSWINDOWS    -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c ruler.cc -o ruler.o
g++ -m32 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -mms-bitfields -Ic:/gtkmm/i386/include/gtkmm-2.4 -Ic:/gtkmm/i386/lib/gtkmm-2.4/include -Ic:/gtkmm/i386/include/atkmm-1.6 -Ic:/gtkmm/i386/include/giomm-2.4 -Ic:/gtkmm/i386/lib/giomm-2.4/include -Ic:/gtkmm/i386/include/pangomm-1.4 -Ic:/gtkmm/i386/lib/pangomm-1.4/include -Ic:/gtkmm/i386/include/gtk-2.0 -Ic:/gtkmm/i386/include/gdkmm-2.4 -Ic:/gtkmm/i386/lib/gdkmm-2.4/include -Ic:/gtkmm/i386/include/atk-1.0 -Ic:/gtkmm/i386/include/glibmm-2.4 -Ic:/gtkmm/i386/lib/glibmm-2.4/include -Ic:/gtkmm/i386/include/glib-2.0 -Ic:/gtkmm/i386/lib/glib-2.0/include -Ic:/gtkmm/i386/include/sigc++-2.0 -Ic:/gtkmm/i386/lib/sigc++-2.0/include -Ic:/gtkmm/i386/include/cairomm-1.0 -Ic:/gtkmm/i386/lib/cairomm-1.0/include -Ic:/gtkmm/i386/include/pango-1.0 -Ic:/gtkmm/i386/include/cairo -Ic:/gtkmm/i386/include -Ic:/gtkmm/i386/include/freetype2 -Ic:/gtkmm/i386/include/libpng14 -Ic:/gtkmm/i386/lib/gtk-2.0/include -Ic:/gtkmm/i386/include/gdk-pixbuf-2.0   -DSO_NAME=HilbertVisGUI -DMSWINDOWS    -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c window.cc -o window.o
g++ -m32 -shared -s -static-libgcc -o HilbertVisGUI.dll tmp.def R_env_prot.o R_interface.o colorizers.o display.o ruler.o window.o -Lc:/gtkmm/i386/lib -Lc:/devel/dist/win32/libpng-1.4.3-1/lib -lgtkmm-2.4 -latkmm-1.6 -lgdkmm-2.4 -lgiomm-2.4 -lpangomm-1.4 -lgtk-win32-2.0 -lglibmm-2.4 -lcairomm-1.0 -lsigc-2.0 -lgdk-win32-2.0 -latk-1.0 -lgio-2.0 -lpangowin32-1.0 -lgdi32 -lpangocairo-1.0 -lgdk_pixbuf-2.0 -lpng14 -lpango-1.0 -lcairo -lgobject-2.0 -lgmodule-2.0 -lgthread-2.0 -lglib-2.0 -lintl -Ld:/RCompile/CRANpkg/extralibs64/local/lib/i386 -Ld:/RCompile/CRANpkg/extralibs64/local/lib -LD:/biocbld/BBS-3˜1.0-B/R/bin/i386 -lR
installing to D:/biocbld/bbs-3.0-bioc/meat/HilbertVisGUI.buildbin-libdir/HilbertVisGUI/libs/i386
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'HilbertVisGUI' ...

   **********************************************
   WARNING: this package has a configure script
         It probably needs manual configuration
   **********************************************


** libs
gcc -m64 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -mms-bitfields -Ic:/gtkmm/x64/include/gtkmm-2.4 -Ic:/gtkmm/x64/lib/gtkmm-2.4/include -Ic:/gtkmm/x64/include/atkmm-1.6 -Ic:/gtkmm/x64/include/giomm-2.4 -Ic:/gtkmm/x64/lib/giomm-2.4/include -Ic:/gtkmm/x64/include/pangomm-1.4 -Ic:/gtkmm/x64/lib/pangomm-1.4/include -Ic:/gtkmm/x64/include/gtk-2.0 -Ic:/gtkmm/x64/include/gdkmm-2.4 -Ic:/gtkmm/x64/lib/gdkmm-2.4/include -Ic:/gtkmm/x64/include/atk-1.0 -Ic:/gtkmm/x64/include/glibmm-2.4 -Ic:/gtkmm/x64/lib/glibmm-2.4/include -Ic:/gtkmm/x64/include/glib-2.0 -Ic:/gtkmm/x64/lib/glib-2.0/include -Ic:/gtkmm/x64/include/sigc++-2.0 -Ic:/gtkmm/x64/lib/sigc++-2.0/include -Ic:/gtkmm/x64/include/cairomm-1.0 -Ic:/gtkmm/x64/lib/cairomm-1.0/include -Ic:/gtkmm/x64/include/pango-1.0 -Ic:/gtkmm/x64/include/cairo -Ic:/gtkmm/x64/include -Ic:/gtkmm/x64/include/freetype2 -Ic:/gtkmm/x64/include/libpng14 -Ic:/gtkmm/x64/lib/gtk-2.0/include -Ic:/gtkmm/x64/include/gdk-pixbuf-2.0   -DSO_NAME=HilbertVisGUI -DMSWINDOWS    -I"d:/RCompile/CRANpkg/extralibs64/local/include"  -mms-bitfields -Ic:/gtkmm/x64/include/gtkmm-2.4 -Ic:/gtkmm/x64/lib/gtkmm-2.4/include -Ic:/gtkmm/x64/include/atkmm-1.6 -Ic:/gtkmm/x64/include/giomm-2.4 -Ic:/gtkmm/x64/lib/giomm-2.4/include -Ic:/gtkmm/x64/include/pangomm-1.4 -Ic:/gtkmm/x64/lib/pangomm-1.4/include -Ic:/gtkmm/x64/include/gtk-2.0 -Ic:/gtkmm/x64/include/gdkmm-2.4 -Ic:/gtkmm/x64/lib/gdkmm-2.4/include -Ic:/gtkmm/x64/include/atk-1.0 -Ic:/gtkmm/x64/include/glibmm-2.4 -Ic:/gtkmm/x64/lib/glibmm-2.4/include -Ic:/gtkmm/x64/include/glib-2.0 -Ic:/gtkmm/x64/lib/glib-2.0/include -Ic:/gtkmm/x64/include/sigc++-2.0 -Ic:/gtkmm/x64/lib/sigc++-2.0/include -Ic:/gtkmm/x64/include/cairomm-1.0 -Ic:/gtkmm/x64/lib/cairomm-1.0/include -Ic:/gtkmm/x64/include/pango-1.0 -Ic:/gtkmm/x64/include/cairo -Ic:/gtkmm/x64/include -Ic:/gtkmm/x64/include/freetype2 -Ic:/gtkmm/x64/include/libpng14 -Ic:/gtkmm/x64/lib/gtk-2.0/include -Ic:/gtkmm/x64/include/gdk-pixbuf-2.0   -DSO_NAME=HilbertVisGUI -DMSWINDOWS   -O2 -Wall  -std=gnu99 -mtune=core2 -c R_env_prot.c -o R_env_prot.o
g++ -m64 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -mms-bitfields -Ic:/gtkmm/x64/include/gtkmm-2.4 -Ic:/gtkmm/x64/lib/gtkmm-2.4/include -Ic:/gtkmm/x64/include/atkmm-1.6 -Ic:/gtkmm/x64/include/giomm-2.4 -Ic:/gtkmm/x64/lib/giomm-2.4/include -Ic:/gtkmm/x64/include/pangomm-1.4 -Ic:/gtkmm/x64/lib/pangomm-1.4/include -Ic:/gtkmm/x64/include/gtk-2.0 -Ic:/gtkmm/x64/include/gdkmm-2.4 -Ic:/gtkmm/x64/lib/gdkmm-2.4/include -Ic:/gtkmm/x64/include/atk-1.0 -Ic:/gtkmm/x64/include/glibmm-2.4 -Ic:/gtkmm/x64/lib/glibmm-2.4/include -Ic:/gtkmm/x64/include/glib-2.0 -Ic:/gtkmm/x64/lib/glib-2.0/include -Ic:/gtkmm/x64/include/sigc++-2.0 -Ic:/gtkmm/x64/lib/sigc++-2.0/include -Ic:/gtkmm/x64/include/cairomm-1.0 -Ic:/gtkmm/x64/lib/cairomm-1.0/include -Ic:/gtkmm/x64/include/pango-1.0 -Ic:/gtkmm/x64/include/cairo -Ic:/gtkmm/x64/include -Ic:/gtkmm/x64/include/freetype2 -Ic:/gtkmm/x64/include/libpng14 -Ic:/gtkmm/x64/lib/gtk-2.0/include -Ic:/gtkmm/x64/include/gdk-pixbuf-2.0   -DSO_NAME=HilbertVisGUI -DMSWINDOWS    -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c R_interface.cc -o R_interface.o
In file included from D:/biocbld/BBS-3˜1.0-B/R/include/R.h:50:0,
                 from R_interface.cc:17:
D:/biocbld/BBS-3˜1.0-B/R/include/R_ext/RS.h:45:0: warning: "ERROR" redefined [enabled by default]
c:\rtools31\gcc-4.6.3\bin\../lib/gcc/i686-w64-mingw32/4.6.3/../../../../i686-w64-mingw32/include/wingdi.h:70:0: note: this is the location of the previous definition
R_interface.cc: In function 'SEXPREC* R_display_hilbert(SEXP)':
R_interface.cc:510:44: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
R_interface.cc:509:11: warning: unused variable 'palette_level' [-Wunused-variable]
R_interface.cc: In member function 'void MainWindowForRForBidir::set_palette_level(double)':
R_interface.cc:702:44: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
R_interface.cc: In member function 'double RDataVector<data_el_t>::get_bin_value(long int, long int) const [with data_el_t = int]':
R_interface.cc:131:9: warning: 'val' may be used uninitialized in this function [-Wuninitialized]
R_interface.cc: In member function 'double RDataVector<data_el_t>::get_bin_value(long int, long int) const [with data_el_t = double]':
R_interface.cc:204:29: warning: 'val' may be used uninitialized in this function [-Wuninitialized]
g++ -m64 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -mms-bitfields -Ic:/gtkmm/x64/include/gtkmm-2.4 -Ic:/gtkmm/x64/lib/gtkmm-2.4/include -Ic:/gtkmm/x64/include/atkmm-1.6 -Ic:/gtkmm/x64/include/giomm-2.4 -Ic:/gtkmm/x64/lib/giomm-2.4/include -Ic:/gtkmm/x64/include/pangomm-1.4 -Ic:/gtkmm/x64/lib/pangomm-1.4/include -Ic:/gtkmm/x64/include/gtk-2.0 -Ic:/gtkmm/x64/include/gdkmm-2.4 -Ic:/gtkmm/x64/lib/gdkmm-2.4/include -Ic:/gtkmm/x64/include/atk-1.0 -Ic:/gtkmm/x64/include/glibmm-2.4 -Ic:/gtkmm/x64/lib/glibmm-2.4/include -Ic:/gtkmm/x64/include/glib-2.0 -Ic:/gtkmm/x64/lib/glib-2.0/include -Ic:/gtkmm/x64/include/sigc++-2.0 -Ic:/gtkmm/x64/lib/sigc++-2.0/include -Ic:/gtkmm/x64/include/cairomm-1.0 -Ic:/gtkmm/x64/lib/cairomm-1.0/include -Ic:/gtkmm/x64/include/pango-1.0 -Ic:/gtkmm/x64/include/cairo -Ic:/gtkmm/x64/include -Ic:/gtkmm/x64/include/freetype2 -Ic:/gtkmm/x64/include/libpng14 -Ic:/gtkmm/x64/lib/gtk-2.0/include -Ic:/gtkmm/x64/include/gdk-pixbuf-2.0   -DSO_NAME=HilbertVisGUI -DMSWINDOWS    -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c colorizers.cc -o colorizers.o
g++ -m64 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -mms-bitfields -Ic:/gtkmm/x64/include/gtkmm-2.4 -Ic:/gtkmm/x64/lib/gtkmm-2.4/include -Ic:/gtkmm/x64/include/atkmm-1.6 -Ic:/gtkmm/x64/include/giomm-2.4 -Ic:/gtkmm/x64/lib/giomm-2.4/include -Ic:/gtkmm/x64/include/pangomm-1.4 -Ic:/gtkmm/x64/lib/pangomm-1.4/include -Ic:/gtkmm/x64/include/gtk-2.0 -Ic:/gtkmm/x64/include/gdkmm-2.4 -Ic:/gtkmm/x64/lib/gdkmm-2.4/include -Ic:/gtkmm/x64/include/atk-1.0 -Ic:/gtkmm/x64/include/glibmm-2.4 -Ic:/gtkmm/x64/lib/glibmm-2.4/include -Ic:/gtkmm/x64/include/glib-2.0 -Ic:/gtkmm/x64/lib/glib-2.0/include -Ic:/gtkmm/x64/include/sigc++-2.0 -Ic:/gtkmm/x64/lib/sigc++-2.0/include -Ic:/gtkmm/x64/include/cairomm-1.0 -Ic:/gtkmm/x64/lib/cairomm-1.0/include -Ic:/gtkmm/x64/include/pango-1.0 -Ic:/gtkmm/x64/include/cairo -Ic:/gtkmm/x64/include -Ic:/gtkmm/x64/include/freetype2 -Ic:/gtkmm/x64/include/libpng14 -Ic:/gtkmm/x64/lib/gtk-2.0/include -Ic:/gtkmm/x64/include/gdk-pixbuf-2.0   -DSO_NAME=HilbertVisGUI -DMSWINDOWS    -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c display.cc -o display.o
g++ -m64 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -mms-bitfields -Ic:/gtkmm/x64/include/gtkmm-2.4 -Ic:/gtkmm/x64/lib/gtkmm-2.4/include -Ic:/gtkmm/x64/include/atkmm-1.6 -Ic:/gtkmm/x64/include/giomm-2.4 -Ic:/gtkmm/x64/lib/giomm-2.4/include -Ic:/gtkmm/x64/include/pangomm-1.4 -Ic:/gtkmm/x64/lib/pangomm-1.4/include -Ic:/gtkmm/x64/include/gtk-2.0 -Ic:/gtkmm/x64/include/gdkmm-2.4 -Ic:/gtkmm/x64/lib/gdkmm-2.4/include -Ic:/gtkmm/x64/include/atk-1.0 -Ic:/gtkmm/x64/include/glibmm-2.4 -Ic:/gtkmm/x64/lib/glibmm-2.4/include -Ic:/gtkmm/x64/include/glib-2.0 -Ic:/gtkmm/x64/lib/glib-2.0/include -Ic:/gtkmm/x64/include/sigc++-2.0 -Ic:/gtkmm/x64/lib/sigc++-2.0/include -Ic:/gtkmm/x64/include/cairomm-1.0 -Ic:/gtkmm/x64/lib/cairomm-1.0/include -Ic:/gtkmm/x64/include/pango-1.0 -Ic:/gtkmm/x64/include/cairo -Ic:/gtkmm/x64/include -Ic:/gtkmm/x64/include/freetype2 -Ic:/gtkmm/x64/include/libpng14 -Ic:/gtkmm/x64/lib/gtk-2.0/include -Ic:/gtkmm/x64/include/gdk-pixbuf-2.0   -DSO_NAME=HilbertVisGUI -DMSWINDOWS    -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c ruler.cc -o ruler.o
g++ -m64 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -mms-bitfields -Ic:/gtkmm/x64/include/gtkmm-2.4 -Ic:/gtkmm/x64/lib/gtkmm-2.4/include -Ic:/gtkmm/x64/include/atkmm-1.6 -Ic:/gtkmm/x64/include/giomm-2.4 -Ic:/gtkmm/x64/lib/giomm-2.4/include -Ic:/gtkmm/x64/include/pangomm-1.4 -Ic:/gtkmm/x64/lib/pangomm-1.4/include -Ic:/gtkmm/x64/include/gtk-2.0 -Ic:/gtkmm/x64/include/gdkmm-2.4 -Ic:/gtkmm/x64/lib/gdkmm-2.4/include -Ic:/gtkmm/x64/include/atk-1.0 -Ic:/gtkmm/x64/include/glibmm-2.4 -Ic:/gtkmm/x64/lib/glibmm-2.4/include -Ic:/gtkmm/x64/include/glib-2.0 -Ic:/gtkmm/x64/lib/glib-2.0/include -Ic:/gtkmm/x64/include/sigc++-2.0 -Ic:/gtkmm/x64/lib/sigc++-2.0/include -Ic:/gtkmm/x64/include/cairomm-1.0 -Ic:/gtkmm/x64/lib/cairomm-1.0/include -Ic:/gtkmm/x64/include/pango-1.0 -Ic:/gtkmm/x64/include/cairo -Ic:/gtkmm/x64/include -Ic:/gtkmm/x64/include/freetype2 -Ic:/gtkmm/x64/include/libpng14 -Ic:/gtkmm/x64/lib/gtk-2.0/include -Ic:/gtkmm/x64/include/gdk-pixbuf-2.0   -DSO_NAME=HilbertVisGUI -DMSWINDOWS    -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c window.cc -o window.o
g++ -m64 -shared -s -static-libgcc -o HilbertVisGUI.dll tmp.def R_env_prot.o R_interface.o colorizers.o display.o ruler.o window.o -Lc:/gtkmm/x64/lib -Lc:/devel/dist/win64/libpng-1.4.3-1/lib -lgtkmm-2.4 -latkmm-1.6 -lgdkmm-2.4 -lgiomm-2.4 -lpangomm-1.4 -lgtk-win32-2.0 -lglibmm-2.4 -lcairomm-1.0 -lsigc-2.0 -lgdk-win32-2.0 -latk-1.0 -lgio-2.0 -lpangowin32-1.0 -lgdi32 -lpangocairo-1.0 -lgdk_pixbuf-2.0 -lpng14 -lpango-1.0 -lcairo -lgobject-2.0 -lgmodule-2.0 -lgthread-2.0 -lglib-2.0 -lintl -Ld:/RCompile/CRANpkg/extralibs64/local/lib/x64 -Ld:/RCompile/CRANpkg/extralibs64/local/lib -LD:/biocbld/BBS-3˜1.0-B/R/bin/x64 -lR
installing to D:/biocbld/bbs-3.0-bioc/meat/HilbertVisGUI.buildbin-libdir/HilbertVisGUI/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'HilbertVisGUI' as HilbertVisGUI_1.24.0.zip
* DONE (HilbertVisGUI)

name	user	system	elapsed
hilbertDisplay	0.56	0.64	1.35

name	user	system	elapsed
hilbertDisplay	0.29	0.62	1.15