Gviz 1.10.11
Florian Hahne
| Snapshot Date: 2015-04-09 16:20:12 -0700 (Thu, 09 Apr 2015) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_0/madman/Rpacks/Gviz | | Last Changed Rev: 101202 / Revision: 102249 | | Last Changed Date: 2015-03-26 02:48:19 -0700 (Thu, 26 Mar 2015) |
| zin1 | Linux (Ubuntu 12.04.4 LTS) / x86_64 | OK | OK | OK | |
| moscato1 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | OK | [ OK ] | OK |
| perceval | Mac OS X Snow Leopard (10.6.8) / x86_64 | OK | OK | OK | OK |
| oaxaca | Mac OS X Mavericks (10.9.5) / x86_64 | OK | ERROR | skipped | skipped |
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### Running command:
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### rm -rf Gviz.buildbin-libdir Gviz.Rcheck && mkdir Gviz.buildbin-libdir Gviz.Rcheck && D:\biocbld\bbs-3.0-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=Gviz.buildbin-libdir Gviz_1.10.11.tar.gz >Gviz.Rcheck\00install.out 2>&1 && cp Gviz.Rcheck\00install.out Gviz-install.out && D:\biocbld\bbs-3.0-bioc\R\bin\R.exe CMD check --library=Gviz.buildbin-libdir --install="check:Gviz-install.out" --force-multiarch --no-vignettes --timings Gviz_1.10.11.tar.gz
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* using log directory 'D:/biocbld/bbs-3.0-bioc/meat/Gviz.Rcheck'
* using R version 3.1.3 (2015-03-09)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'Gviz/DESCRIPTION' ... OK
* this is package 'Gviz' version '1.10.11'
* checking package namespace information ... OK
* checking package dependencies ... NOTE
Depends: includes the non-default packages:
'grid' 'BiocGenerics' 'S4Vectors' 'IRanges' 'GenomeInfoDb'
'GenomicRanges'
Adding so many packages to the search path is excessive and importing
selectively is preferable.
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'Gviz' can be installed ... OK
* checking installed package size ... NOTE
installed size is 5.7Mb
sub-directories of 1Mb or more:
doc 1.7Mb
extdata 2.1Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
.findMismatches: no visible global function definition for
'consensusString'
.moreInd: no visible global function definition for 'grid.polyline'
subseq,SequenceTrack: no visible global function definition for
'unmasked'
subseq,SequenceTrack: no visible global function definition for
'complement'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [72s] OK
Examples with CPU or elapsed time > 5s
user system elapsed
SequenceTrack-class 17.47 0.37 17.85
AlignmentsTrack 10.97 0.36 11.41
GeneRegionTrack-class 6.44 0.06 6.76
AnnotationTrack-class 5.44 0.05 5.49
GenomeAxisTrack-class 5.18 0.02 5.19
** running examples for arch 'x64' ... [91s] OK
Examples with CPU or elapsed time > 5s
user system elapsed
SequenceTrack-class 20.41 0.49 20.89
AlignmentsTrack 13.78 0.50 14.36
GeneRegionTrack-class 8.46 0.08 9.86
AnnotationTrack-class 6.38 0.00 6.38
plotTracks 6.19 0.00 6.22
GenomeAxisTrack-class 5.40 0.01 5.57
BiomartGeneRegionTrack-class 5.05 0.01 5.18
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
NOTE: There were 3 notes.
See
'D:/biocbld/bbs-3.0-bioc/meat/Gviz.Rcheck/00check.log'
for details.
install for i386
* installing *source* package 'Gviz' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
install for x64
* installing *source* package 'Gviz' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'Gviz' as Gviz_1.10.11.zip
* DONE (Gviz)