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BioC 3.0: CHECK report for GeneRegionScan on moscato1

This page was generated on 2015-04-10 09:45:45 -0700 (Fri, 10 Apr 2015).

Package 354/933HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
GeneRegionScan 1.22.0
Lasse Folkersen
Snapshot Date: 2015-04-09 16:20:12 -0700 (Thu, 09 Apr 2015)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_0/madman/Rpacks/GeneRegionScan
Last Changed Rev: 95439 / Revision: 102249
Last Changed Date: 2014-10-13 14:38:33 -0700 (Mon, 13 Oct 2014)
zin1 Linux (Ubuntu 12.04.4 LTS) / x86_64  NotNeeded  OK  WARNINGS 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  NotNeeded  OK [ WARNINGS ] OK 
perceval Mac OS X Snow Leopard (10.6.8) / x86_64  NotNeeded  OK  WARNINGS  OK 
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded  OK  WARNINGS  OK 

Summary

Package: GeneRegionScan
Version: 1.22.0
Command: rm -rf GeneRegionScan.buildbin-libdir GeneRegionScan.Rcheck && mkdir GeneRegionScan.buildbin-libdir GeneRegionScan.Rcheck && D:\biocbld\bbs-3.0-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=GeneRegionScan.buildbin-libdir GeneRegionScan_1.22.0.tar.gz >GeneRegionScan.Rcheck\00install.out 2>&1 && cp GeneRegionScan.Rcheck\00install.out GeneRegionScan-install.out && D:\biocbld\bbs-3.0-bioc\R\bin\R.exe CMD check --library=GeneRegionScan.buildbin-libdir --install="check:GeneRegionScan-install.out" --force-multiarch --no-vignettes --timings GeneRegionScan_1.22.0.tar.gz
StartedAt: 2015-04-10 01:27:45 -0700 (Fri, 10 Apr 2015)
EndedAt: 2015-04-10 01:34:46 -0700 (Fri, 10 Apr 2015)
EllapsedTime: 421.9 seconds
RetCode: 0
Status:  WARNINGS  
CheckDir: GeneRegionScan.Rcheck
Warnings: 2

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf GeneRegionScan.buildbin-libdir GeneRegionScan.Rcheck && mkdir GeneRegionScan.buildbin-libdir GeneRegionScan.Rcheck && D:\biocbld\bbs-3.0-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=GeneRegionScan.buildbin-libdir GeneRegionScan_1.22.0.tar.gz >GeneRegionScan.Rcheck\00install.out 2>&1 && cp GeneRegionScan.Rcheck\00install.out GeneRegionScan-install.out  && D:\biocbld\bbs-3.0-bioc\R\bin\R.exe CMD check --library=GeneRegionScan.buildbin-libdir --install="check:GeneRegionScan-install.out" --force-multiarch --no-vignettes --timings GeneRegionScan_1.22.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'D:/biocbld/bbs-3.0-bioc/meat/GeneRegionScan.Rcheck'
* using R version 3.1.3 (2015-03-09)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'GeneRegionScan/DESCRIPTION' ... OK
* this is package 'GeneRegionScan' version '1.22.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'GeneRegionScan' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 20.4Mb
  sub-directories of 1Mb or more:
    exec  19.7Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Packages listed in more than one of Depends, Imports, Suggests, Enhances:
  'Biobase' 'Biostrings'
A package should be listed in only one of these fields.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... NOTE
'library' or 'require' calls in package code:
  'AnnotationDbi' 'BSgenome' 'affy'
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.
Package in Depends field not imported from: 'methods'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
plotOnGene,ExpressionSet: warning in plot.default(1, type = "n", xlab =
  "bp", ylab = ylab, frame = FALSE, xlim = xlim, ylim = ylim, main =
  paste("Expression of probes"), cex.main = 1): partial argument match
  of 'frame' to 'frame.plot'
exonStructure: no visible global function definition for 'width'
findSequenceInGenome: no visible global function definition for
  'seqnames'
findSequenceInGenome: no visible global function definition for
  'reverse'
findSequenceInGenome: no visible global function definition for
  'unmasked'
findSequenceInGenome: no visible global function definition for
  'startIndex'
getLocalProbeIntensities : get_probe_indices: no visible global
  function definition for 'xy2indices'
getProbesetsFromRegionOfInterest: no visible global function definition
  for 'revmap'
readFASTA_replacement: no visible global function definition for
  'read.DNAStringSet'
addSnpPdata,ExpressionSet: no visible global function definition for
  'sampleNames'
addSnpPdata,ExpressionSet: no visible global function definition for
  'pData'
addSnpPdata,ExpressionSet: no visible global function definition for
  'pData<-'
addSnpPdata,ExpressionSet: no visible global function definition for
  'notes'
addSnpPdata,ExpressionSet: no visible global function definition for
  'notes<-'
doProbeLinear,ExpressionSet: no visible global function definition for
  'pData'
doProbeLinear,ExpressionSet: no visible global function definition for
  'featureNames'
doProbeTTest,ExpressionSet: no visible global function definition for
  'pData'
doProbeTTest,ExpressionSet: no visible global function definition for
  'featureNames'
excludeDoubleMatchingProbes,ProbeLevelSet: no visible global function
  definition for 'featureNames'
excludeDoubleMatchingProbes,ProbeLevelSet: no visible global function
  definition for 'pData'
excludeDoubleMatchingProbes,ProbeLevelSet: no visible global function
  definition for 'featureData'
excludeDoubleMatchingProbes,ProbeLevelSet: no visible global function
  definition for 'pData<-'
excludeDoubleMatchingProbes,ProbeLevelSet: no visible global function
  definition for 'featureData<-'
excludeDoubleMatchingProbes,ProbeLevelSet: no visible global function
  definition for 'exprs<-'
excludeDoubleMatchingProbes,ProbeLevelSet: no visible global function
  definition for 'notes'
excludeDoubleMatchingProbes,ProbeLevelSet: no visible global function
  definition for 'notes<-'
findProbePositions,ExpressionSet: no visible global function definition
  for 'pData'
findProbePositions,ExpressionSet: no visible global function definition
  for 'featureData'
findProbePositions,ExpressionSet: no visible global function definition
  for 'featureNames'
findProbePositions,ExpressionSet: no visible global function definition
  for 'reverse'
findProbePositions,ExpressionSet: no visible global function definition
  for 'countIndex'
findProbePositions,ExpressionSet: no visible global function definition
  for 'startIndex'
getSequence,ProbeLevelSet: no visible global function definition for
  'pData'
getSequence,ProbeLevelSet: no visible global function definition for
  'featureData'
plotCoexpression,ExpressionSet: no visible global function definition
  for 'pData'
plotCoexpression,ExpressionSet: no visible global function definition
  for 'featureData'
plotCoexpression,ExpressionSet: no visible global function definition
  for 'featureNames'
plotCoexpression,ExpressionSet: no visible binding for global variable
  'interval'
plotCoexpression,ExpressionSet : calculate_coexpression: no visible
  global function definition for 'featureNames'
plotOnGene,ExpressionSet: no visible global function definition for
  'pData'
plotOnGene,ExpressionSet: no visible global function definition for
  'pData<-'
plotOnGene,ExpressionSet: no visible global function definition for
  'featureData'
plotOnGene,ExpressionSet: no visible global function definition for
  'featureNames'
plotOnGene,ExpressionSet: no visible global function definition for
  'experimentData'
plotStatistics,ExpressionSet: no visible global function definition for
  'pData'
translateSampleNames,ExpressionSet: no visible global function
  definition for 'sampleNames'
translateSampleNames,ExpressionSet: no visible global function
  definition for 'pData'
translateSampleNames,ExpressionSet: no visible global function
  definition for 'pData<-'
translateSampleNames,ExpressionSet: no visible global function
  definition for 'exprs<-'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [113s] WARNING
Found the following significant warnings:

  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
Deprecated functions may be defunct as soon as of the next release of
R.
See ?Deprecated.
Examples with CPU or elapsed time > 5s
                  user system elapsed
geneRegionScan   48.07   0.00   48.19
plotCoexpression 32.99   0.00   33.01
plotOnGene       14.18   0.00   14.32
exonStructure     8.03   0.01    8.05
** running examples for arch 'x64' ... [124s] WARNING
Found the following significant warnings:

  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
  Warning: 'countIndex' is deprecated.
Deprecated functions may be defunct as soon as of the next release of
R.
See ?Deprecated.
Examples with CPU or elapsed time > 5s
                  user system elapsed
geneRegionScan   54.15   0.05   55.46
plotCoexpression 36.99   0.00   36.99
plotOnGene       14.13   0.00   14.15
exonStructure     8.74   0.04    8.78
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

WARNING: There were 2 warnings.
NOTE: There were 4 notes.
See
  'D:/biocbld/bbs-3.0-bioc/meat/GeneRegionScan.Rcheck/00check.log'
for details.

GeneRegionScan.Rcheck/00install.out:


install for i386

* installing *source* package 'GeneRegionScan' ...
** R
** data
** exec
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'GeneRegionScan' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'GeneRegionScan' as GeneRegionScan_1.22.0.zip
* DONE (GeneRegionScan)

GeneRegionScan.Rcheck/examples_i386/GeneRegionScan-Ex.timings:

nameusersystemelapsed
addSnpPdata000
checkForFileInPath0.110.000.24
doProbeLinear3.160.003.17
doProbeTTest0.500.000.49
exampleProbeLevelSet0.050.000.05
excludeDoubleMatchingProbes000
exonStructure8.030.018.05
findProbePositions0.420.000.42
findSequenceInGenome000
geneRegionScan48.07 0.0048.19
getLocalMetaprobeIntensities000
getLocalProbeIntensities000
getMetaprobesetsFromRegionOfInterest000
getProbeLevelAnnotationForExonArrays000
getProbesetsFromMetaprobeset000
getProbesetsFromRegionOfInterest000
getSequence0.030.000.03
getServerProbeIntensities000
plotCoexpression32.99 0.0033.01
plotOnGene14.18 0.0014.32
readGeneInput000
translateSampleNames0.080.000.08

GeneRegionScan.Rcheck/examples_x64/GeneRegionScan-Ex.timings:

nameusersystemelapsed
addSnpPdata000
checkForFileInPath0.000.060.07
doProbeLinear2.470.002.46
doProbeTTest0.480.020.50
exampleProbeLevelSet0.030.000.03
excludeDoubleMatchingProbes000
exonStructure8.740.048.78
findProbePositions0.540.020.56
findSequenceInGenome000
geneRegionScan54.15 0.0555.46
getLocalMetaprobeIntensities000
getLocalProbeIntensities000
getMetaprobesetsFromRegionOfInterest000
getProbeLevelAnnotationForExonArrays000
getProbesetsFromMetaprobeset000
getProbesetsFromRegionOfInterest000
getSequence0.030.000.11
getServerProbeIntensities000
plotCoexpression36.99 0.0036.99
plotOnGene14.13 0.0014.15
readGeneInput000
translateSampleNames0.050.000.04