Back to the "Multiple platform build/check report" A  B  C  D [E] F  G  H  I  J  K  L  M  N  O  P  Q  R  S  T  U  V  W  X  Y  Z 

BioC 3.0: BUILD BIN report for EDDA on oaxaca

This page was generated on 2015-04-10 10:08:40 -0700 (Fri, 10 Apr 2015).

Package 270/933HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
EDDA 1.5.3
Chia Kuan Hui Burton , Niranjan Nagarajan
Snapshot Date: 2015-04-09 16:20:12 -0700 (Thu, 09 Apr 2015)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_0/madman/Rpacks/EDDA
Last Changed Rev: 98325 / Revision: 102249
Last Changed Date: 2015-01-13 23:07:42 -0800 (Tue, 13 Jan 2015)
zin1 Linux (Ubuntu 12.04.4 LTS) / x86_64  NotNeeded  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  NotNeeded  OK  OK  OK 
perceval Mac OS X Snow Leopard (10.6.8) / x86_64  NotNeeded  OK  OK  OK 
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded  OK  OK [ OK ]

Summary

Package: EDDA
Version: 1.5.3
Command: rm -rf EDDA.buildbin-libdir && mkdir EDDA.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh EDDA_1.5.3.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R EDDA.buildbin-libdir
StartedAt: 2015-04-10 04:33:42 -0700 (Fri, 10 Apr 2015)
EndedAt: 2015-04-10 04:34:08 -0700 (Fri, 10 Apr 2015)
EllapsedTime: 26.1 seconds
RetCode: 0
Status:  OK 
PackageFile: EDDA_1.5.3.tgz
PackageFileSize: 1.878 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf EDDA.buildbin-libdir && mkdir EDDA.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh EDDA_1.5.3.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R EDDA.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=EDDA.buildbin-libdir EDDA_1.5.3.tar.gz'
>>>>>>> 

* installing *source* package ‘EDDA’ ...
** libs
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I"/Library/Frameworks/R.framework/Versions/3.1/Resources/library/Rcpp/include"   -fPIC  -Wall -mtune=core2 -g -O2  -c cuffdiff.cpp -o cuffdiff.o
clang++ -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o EDDA.so cuffdiff.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.0-bioc/meat/EDDA.buildbin-libdir/EDDA/libs
** R
** data
** inst
** preparing package for lazy loading
No methods found in "baySeq" for requests: rbind
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
No methods found in "baySeq" for requests: rbind
* DONE (EDDA)


>>>>>>> 
>>>>>>> FIXING LINKS FOR EDDA.buildbin-libdir/EDDA/libs//EDDA.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.1/Resources/lib/libgcc_s.1.dylib" "EDDA.buildbin-libdir/EDDA/libs//EDDA.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.1/Resources/lib/libgfortran.3.dylib" "EDDA.buildbin-libdir/EDDA/libs//EDDA.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.1/Resources/lib/libreadline.5.2.dylib" "EDDA.buildbin-libdir/EDDA/libs//EDDA.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.1/Resources/lib/libreadline.dylib" "EDDA.buildbin-libdir/EDDA/libs//EDDA.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.1/Resources/lib/libquadmath.0.dylib" "EDDA.buildbin-libdir/EDDA/libs//EDDA.so"